FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0064, 579 aa
  1>>>pF1KE0064 579 - 579 aa - 579 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7756+/-0.00113; mu= -2.0327+/- 0.068
 mean_var=489.1221+/-95.588, 0's: 0 Z-trim(116.4): 40  B-trim: 62 in 1/52
 Lambda= 0.057992
 statistics sampled from 16938 (16975) to 16938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.521), width:  16
 Scan time:  3.830

The best scores are:                                      opt bits E(32554)
CCDS30862.1 KPRP gene_id:448834|Hs108|chr1         ( 579) 4419 384.3 2.3e-106


>>CCDS30862.1 KPRP gene_id:448834|Hs108|chr1              (579 aa)
 initn: 4419 init1: 4419 opt: 4419  Z-score: 2023.1  bits: 384.3 E(32554): 2.3e-106
Smith-Waterman score: 4419; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579)

               10        20        30        40        50        60
pF1KE0 MCDQQQIQCRLPLQQCCVKGPSFCSSQSPFAQSQVVVQAPCEMQIVDCPASCPVQVCQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MCDQQQIQCRLPLQQCCVKGPSFCSSQSPFAQSQVVVQAPCEMQIVDCPASCPVQVCQVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DQAPCQSQTTQVKCQSKTKQVKGQAQCQSKTTQVKGQAASQSQTSSVQSQAPCQSEVSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DQAPCQSQTTQVKCQSKTKQVKGQAQCQSKTTQVKGQAASQSQTSSVQSQAPCQSEVSYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QCEASQPVQTCFVECAPVCYTETCYVECPVQNYVPCPAPQPVQMYRGRPAVCQPQGRFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QCEASQPVQTCFVECAPVCYTETCYVECPVQNYVPCPAPQPVQMYRGRPAVCQPQGRFST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QCQYQGSYSSCGPQFQSRATCNNYTPQFQLRPSYSSCFPQYRSRTSFSPCVPQCQTQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QCQYQGSYSSCGPQFQSRATCNNYTPQFQLRPSYSSCFPQYRSRTSFSPCVPQCQTQGSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 LPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQE
              490       500       510       520       530       540

              550       560       570         
pF1KE0 SGAGCGPGDVFPERRGQDGHGDQGNAFAGVKGEAKSAYF
       :::::::::::::::::::::::::::::::::::::::
CCDS30 SGAGCGPGDVFPERRGQDGHGDQGNAFAGVKGEAKSAYF
              550       560       570         




579 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:19:43 2016 done: Fri Nov  4 05:19:44 2016
 Total Scan time:  3.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]