FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0064, 579 aa
  1>>>pF1KE0064 579 - 579 aa - 579 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0102+/-0.000456; mu= -9.3521+/- 0.028
 mean_var=554.2511+/-116.235, 0's: 0 Z-trim(124.0): 70  B-trim: 760 in 1/58
 Lambda= 0.054478
 statistics sampled from 44717 (44832) to 44717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.526), width:  16
 Scan time: 12.660

The best scores are:                                      opt bits E(85289)
NP_001020402 (OMIM: 613260) keratinocyte proline-r ( 579) 4419 362.2 2.7e-99
XP_011507873 (OMIM: 613260) PREDICTED: keratinocyt ( 579) 4419 362.2 2.7e-99


>>NP_001020402 (OMIM: 613260) keratinocyte proline-rich   (579 aa)
 initn: 4419 init1: 4419 opt: 4419  Z-score: 1903.6  bits: 362.2 E(85289): 2.7e-99
Smith-Waterman score: 4419; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579)

               10        20        30        40        50        60
pF1KE0 MCDQQQIQCRLPLQQCCVKGPSFCSSQSPFAQSQVVVQAPCEMQIVDCPASCPVQVCQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCDQQQIQCRLPLQQCCVKGPSFCSSQSPFAQSQVVVQAPCEMQIVDCPASCPVQVCQVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DQAPCQSQTTQVKCQSKTKQVKGQAQCQSKTTQVKGQAASQSQTSSVQSQAPCQSEVSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQAPCQSQTTQVKCQSKTKQVKGQAQCQSKTTQVKGQAASQSQTSSVQSQAPCQSEVSYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QCEASQPVQTCFVECAPVCYTETCYVECPVQNYVPCPAPQPVQMYRGRPAVCQPQGRFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCEASQPVQTCFVECAPVCYTETCYVECPVQNYVPCPAPQPVQMYRGRPAVCQPQGRFST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QCQYQGSYSSCGPQFQSRATCNNYTPQFQLRPSYSSCFPQYRSRTSFSPCVPQCQTQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCQYQGSYSSCGPQFQSRATCNNYTPQFQLRPSYSSCFPQYRSRTSFSPCVPQCQTQGSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 LPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQE
              490       500       510       520       530       540

              550       560       570         
pF1KE0 SGAGCGPGDVFPERRGQDGHGDQGNAFAGVKGEAKSAYF
       :::::::::::::::::::::::::::::::::::::::
NP_001 SGAGCGPGDVFPERRGQDGHGDQGNAFAGVKGEAKSAYF
              550       560       570         

>>XP_011507873 (OMIM: 613260) PREDICTED: keratinocyte pr  (579 aa)
 initn: 4419 init1: 4419 opt: 4419  Z-score: 1903.6  bits: 362.2 E(85289): 2.7e-99
Smith-Waterman score: 4419; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579)

               10        20        30        40        50        60
pF1KE0 MCDQQQIQCRLPLQQCCVKGPSFCSSQSPFAQSQVVVQAPCEMQIVDCPASCPVQVCQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCDQQQIQCRLPLQQCCVKGPSFCSSQSPFAQSQVVVQAPCEMQIVDCPASCPVQVCQVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DQAPCQSQTTQVKCQSKTKQVKGQAQCQSKTTQVKGQAASQSQTSSVQSQAPCQSEVSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQAPCQSQTTQVKCQSKTKQVKGQAQCQSKTTQVKGQAASQSQTSSVQSQAPCQSEVSYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QCEASQPVQTCFVECAPVCYTETCYVECPVQNYVPCPAPQPVQMYRGRPAVCQPQGRFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCEASQPVQTCFVECAPVCYTETCYVECPVQNYVPCPAPQPVQMYRGRPAVCQPQGRFST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QCQYQGSYSSCGPQFQSRATCNNYTPQFQLRPSYSSCFPQYRSRTSFSPCVPQCQTQGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCQYQGSYSSCGPQFQSRATCNNYTPQFQLRPSYSSCFPQYRSRTSFSPCVPQCQTQGSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 LPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQE
              490       500       510       520       530       540

              550       560       570         
pF1KE0 SGAGCGPGDVFPERRGQDGHGDQGNAFAGVKGEAKSAYF
       :::::::::::::::::::::::::::::::::::::::
XP_011 SGAGCGPGDVFPERRGQDGHGDQGNAFAGVKGEAKSAYF
              550       560       570         




579 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:19:44 2016 done: Fri Nov  4 05:19:46 2016
 Total Scan time: 12.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]