Result of FASTA (ccds) for
pF1KE0076
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0076, 1603 aa
1>>>pF1KE0076 1603 - 1603 aa - 1603 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.2390+/-0.00104; mu= -5.8690+/- 0.063
mean_var=419.0922+/-85.899, 0's: 0 Z-trim(116.5): 27 B-trim: 178 in 1/54
Lambda= 0.062650
statistics sampled from 17054 (17076) to 17054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.525), width: 16
Scan time: 6.750
The best scores are: opt bits E(32554)
CCDS30652.1 AHDC1 gene_id:27245|Hs108|chr1 (1603) 11153 1023.5 0
>>CCDS30652.1 AHDC1 gene_id:27245|Hs108|chr1 (1603 aa)
initn: 11153 init1: 11153 opt: 11153 Z-score: 5461.8 bits: 1023.5 E(32554): 0
Smith-Waterman score: 11153; 100.0% identity (100.0% similar) in 1603 aa overlap (1-1603:1-1603)
10 20 30 40 50 60
pF1KE0 MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHAFSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHAFSEN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDNGRVNLRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPVGDGSSSRRCWDNGRVNLRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EERATPHAKSERPSHPLYEPEPEPRDSPQPGQGHSPGATAAATGLPPEPEPDSTDYSELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EERATPHAKSERPSHPLYEPEPEPRDSPQPGQGHSPGATAAATGLPPEPEPDSTDYSELA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 DADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLDPQPRFLDPQALEPLGEALELPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLDPQPRFLDPQALEPLGEALELPPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 QPLADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QPLADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADAGPEGRLLPLPMPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADAGPEGRLLPLPMPT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 GLVAALAEPPPPPPPPPPALPGPGPVSVPELKPESSQTPVVSTRKGKCRGVRRMVVKMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GLVAALAEPPPPPPPPPPALPGPGPVSVPELKPESSQTPVVSTRKGKCRGVRRMVVKMAK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 IPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSAEPTPLLKMKNNGRNVVVVFPPGEMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSAEPTPLLKMKNNGRNVVVVFPPGEMP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 IILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATMAMPEVKKRRRRKQKLASPQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATMAMPEVKKRRRRKQKLASPQPS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 YAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISHFLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISHFLH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 RVQGFRRRGGKAGGFGGRGGGHAAKSARCSFSDFFEGIGKKKKVVAVAAAGVGGPGLTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RVQGFRRRGGKAGGFGGRGGGHAAKSARCSFSDFFEGIGKKKKVVAVAAAGVGGPGLTEL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 GHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 GHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYSTGAPSGQTELSQERQNLFTGYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYSTGAPSGQTELSQERQNLFTGYF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 RSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 GSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSSGAGADPSFQPVLSARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTT
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 HPPANTYLPQYGGYGAGQSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HPPANTYLPQYGGYGAGQSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGY
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE0 APPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 APPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATS
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE0 AASAASSSSSSFQPSPENCRQFAGASQWPFRQGYGGLDWASEAFSQLYNPSFDCHVSEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AASAASSSSSSFQPSPENCRQFAGASQWPFRQGYGGLDWASEAFSQLYNPSFDCHVSEPN
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE0 VILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE0 LEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFPTSASAAASGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFPTSASAAASGY
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE0 PSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE0 SSMSPLPSQSRAFGVGERDPCDFIGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SSMSPLPSQSRAFGVGERDPCDFIGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHF
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE0 PPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLGHAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLGHAAAA
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KE0 QAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGTGLLADFLGRTEAACL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGTGLLADFLGRTEAACL
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KE0 SAPHLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SAPHLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQ
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600
pF1KE0 DTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL
:::::::::::::::::::::::::::::::::::::::::::
CCDS30 DTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL
1570 1580 1590 1600
1603 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:10:27 2016 done: Fri Nov 4 04:10:28 2016
Total Scan time: 6.750 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]