(Circular) (Six-base) MAPSORT of: pF1KE0077.seq Check: 832 from: 1 to: 6722 pF1KE0077 6722 bp With 182 enzymes: SgfI * April 24, 2009 13:10 .. AccI GT'mk_AC Cuts at: 3760 3760 Size: 6722 Acc65I G'GTAC_C Cuts at: 3738 3738 Size: 6722 AclI AA'CG_TT Cuts at: 6562 6562 Size: 6722 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 217 1301 1998 2379 4547 4979 5726 5994 217 Size: 1084 697 381 2168 432 747 268 945 Fragments arranged by size: 2168 1084 945 747 697 432 381 268 AfeI AGC'GCT Cuts at: 2392 2392 Size: 6722 AflIII A'CryG_T Cuts at: 4074 5178 6155 4074 Size: 1104 977 4641 Fragments arranged by size: 4641 1104 977 AgeI A'CCGG_T Cuts at: 5110 5110 Size: 6722 AleI CACnn'nnGTG Cuts at: 2224 2224 Size: 6722 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1084 1250 2104 2467 3299 1084 Size: 166 854 363 832 4507 Fragments arranged by size: 4507 854 832 363 166 AlwNI CAG_nnn'CTG Cuts at: 234 396 450 771 1482 1820 1845 1857 2979 Size: 162 54 321 711 338 25 12 1122 Cuts at: 2979 3640 3712 4027 5594 234 Size: 661 72 315 1567 1362 Fragments arranged by size: 1567 1362 1122 711 661 338 321 315 162 72 54 25 12 ApaI G_GGCC'C Cuts at: 312 2562 2898 3454 312 Size: 2250 336 556 3580 Fragments arranged by size: 3580 2250 556 336 ApaLI G'TGCA_C Cuts at: 2932 3027 5492 2932 Size: 95 2465 4162 Fragments arranged by size: 4162 2465 95 ApoI r'AATT_y Cuts at: 973 3726 6075 6331 973 Size: 2753 2349 256 1364 Fragments arranged by size: 2753 2349 1364 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6722 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6722 AvaI C'yCGr_G Cuts at: 141 2261 2665 2897 3742 141 Size: 2120 404 232 845 3121 Fragments arranged by size: 3121 2120 845 404 232 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 3460 3493 3460 Size: 33 6689 BamHI G'GATC_C Cuts at: 257 756 3747 257 Size: 499 2991 3232 Fragments arranged by size: 3232 2991 499 BanI G'GyrC_C Cuts at: 1558 1603 1775 1977 2256 2266 2436 3619 3738 Size: 45 172 202 279 10 170 1183 119 Cuts at: 3738 4152 4400 4435 1558 Size: 414 248 35 3845 Fragments arranged by size: 3845 1183 414 279 248 202 172 170 119 45 35 10 BanII G_rGCy'C Cuts at: 312 712 1436 2005 2012 2562 2672 2898 3454 Size: 400 724 569 7 550 110 226 556 Cuts at: 3454 3650 3736 4766 312 Size: 196 86 1030 2268 Fragments arranged by size: 2268 1030 724 569 556 550 400 226 196 110 86 7 BbeI G_GCGC'C Cuts at: 1779 4156 4404 1779 Size: 2377 248 4097 Fragments arranged by size: 4097 2377 248 BbsI GAAGACnn'nnnn_ Cuts at: 1734 2869 1734 Size: 1135 5587 BbvCI CC'TCA_GC Cuts at: 1039 1756 1039 Size: 717 6005 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1593 1627 3018 3052 1593 Size: 34 1391 34 5263 Fragments arranged by size: 5263 1391 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4620 5381 6722 4620 Size: 761 1341 4620 Fragments arranged by size: 4620 1341 761 BclI T'GATC_A Cuts at: 4242 4242 Size: 6722 BglI GCCn_nnn'nGGC Cuts at: 307 1201 2434 2731 2923 307 Size: 894 1233 297 192 4106 Fragments arranged by size: 4106 1233 894 297 192 BglII A'GATC_T Cuts at: 4237 6274 4237 Size: 2037 4685 BlpI GC'TnA_GC Cuts at: 2813 3834 2813 Size: 1021 5701 Bme1580I G_kGCm'C Cuts at: 312 900 1443 1606 1982 2100 2269 2562 2898 Size: 588 543 163 376 118 169 293 336 Cuts at: 2898 2936 3031 3454 4347 4440 5496 312 Size: 38 95 423 893 93 1056 1538 Fragments arranged by size: 1538 1056 893 588 543 423 376 336 293 169 163 118 95 93 38 BmrI ACTGGGnnnn_n' Cuts at: 1359 2008 2514 2826 3722 3934 4015 4350 6494 Size: 649 506 312 896 212 81 335 2144 Cuts at: 6494 1359 Size: 1587 Fragments arranged by size: 2144 1587 896 649 506 335 312 212 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 715 5089 715 Size: 4374 2348 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 499 793 1155 1552 1797 2042 2134 2609 2842 Size: 294 362 397 245 245 92 475 233 Cuts at: 2842 499 Size: 4379 Fragments arranged by size: 4379 475 397 362 294 245 245 233 92 Bpu10I CC'TnA_GC Cuts at: 1039 1756 1829 2162 2203 2287 2299 3529 1039 Size: 717 73 333 41 84 12 1230 4232 Fragments arranged by size: 4232 1230 717 333 84 73 41 12 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 820 2389 3292 3898 4777 5269 5567 820 Size: 1569 903 606 879 492 298 1975 Fragments arranged by size: 1975 1569 903 879 606 492 298 BsaI GGTCTCn'nnnn_ Cuts at: 328 1013 6426 328 Size: 685 5413 624 Fragments arranged by size: 5413 685 624 BsaAI yAC'GTr Cuts at: 849 3213 4075 849 Size: 2364 862 3496 Fragments arranged by size: 3496 2364 862 BsaBI GATnn'nnATC Cuts at: 6 1840 4236 6273 6 Size: 1834 2396 2037 455 Fragments arranged by size: 2396 2037 1834 455 BsaHI Gr'CG_yC Cuts at: 1776 2594 4153 4401 5103 6599 1776 Size: 818 1559 248 702 1496 1899 Fragments arranged by size: 1899 1559 1496 818 702 248 BsaWI w'CCGG_w Cuts at: 3911 4432 5110 5384 5531 5942 3911 Size: 521 678 274 147 411 4691 Fragments arranged by size: 4691 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 491 521 2344 2374 491 Size: 30 1823 30 4839 Fragments arranged by size: 4839 1823 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 439 790 1156 1233 2068 2071 3046 3397 3537 Size: 351 366 77 835 3 975 351 140 Cuts at: 3537 439 Size: 3624 Fragments arranged by size: 3624 975 835 366 351 351 140 77 3 BseYI C'CCAG_C Cuts at: 156 187 417 780 1002 1223 1746 1857 2294 Size: 31 230 363 222 221 523 111 437 Cuts at: 2294 2926 2944 3318 4147 4905 5482 5978 156 Size: 632 18 374 829 758 577 496 900 Fragments arranged by size: 900 829 758 632 577 523 496 437 374 363 230 222 221 111 31 18 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 850 1207 1701 2368 2437 2749 850 Size: 357 494 667 69 312 4823 Fragments arranged by size: 4823 667 494 357 312 69 BsiEI CG_ry'CG Cuts at: 104 118 729 4264 4310 5518 104 Size: 14 611 3535 46 1208 1308 Fragments arranged by size: 3535 1308 1208 611 46 14 BsiHKAI G_wGCw'C Cuts at: 284 1063 1802 2012 2183 2193 2672 2936 3031 Size: 779 739 210 171 10 479 264 95 Cuts at: 3031 3048 3278 3392 3736 4514 4704 5496 284 Size: 17 230 114 344 778 190 792 1510 Fragments arranged by size: 1510 792 779 778 739 479 344 264 230 210 190 171 114 95 17 10 BsmBI CGTCTCn'nnnn_ Cuts at: 2585 2585 Size: 6722 Bsp1286I G_dGCh'C Cuts at: 284 312 712 900 1063 1436 1443 1606 1802 Size: 28 400 188 163 373 7 163 196 Cuts at: 1802 1982 2005 2012 2100 2183 2193 2269 2562 Size: 180 23 7 88 83 10 76 293 Cuts at: 2562 2672 2898 2936 3031 3048 3278 3392 3454 Size: 110 226 38 95 17 230 114 62 Cuts at: 3454 3650 3736 4347 4440 4514 4704 4766 5496 Size: 196 86 611 93 74 190 62 730 Cuts at: 5496 284 Size: 1510 Fragments arranged by size: 1510 730 611 400 373 293 230 226 196 196 190 188 180 163 163 114 110 95 93 88 86 83 76 74 62 62 38 28 23 17 10 7 7 BspEI T'CCGG_A Cuts at: 5942 5942 Size: 6722 BspHI T'CATG_A Cuts at: 5898 5898 Size: 6722 BspMI ACCTGCnnnn'nnnn_ Cuts at: 728 3260 3772 3986 4288 4669 728 Size: 2532 512 214 302 381 2781 Fragments arranged by size: 2781 2532 512 381 302 214 BsrBI CCG'CTC Cuts at: 50 630 5014 5068 6552 6717 50 Size: 580 4384 54 1484 165 55 Fragments arranged by size: 4384 1484 580 165 55 54 BsrDI GCAATG_nn' Cuts at: 1883 2547 3313 4634 1883 Size: 664 766 1321 3971 Fragments arranged by size: 3971 1321 766 664 BsrFI r'CCGG_y Cuts at: 2424 2917 4720 4901 5110 2424 Size: 493 1803 181 209 4036 Fragments arranged by size: 4036 1803 493 209 181 BsrGI T'GTAC_A Cuts at: 3476 3476 Size: 6722 BssSI C'ACGA_G Cuts at: 937 3418 4993 5351 937 Size: 2481 1575 358 2308 Fragments arranged by size: 2481 2308 1575 358 BstAPI GCAn_nnn'nTGC Cuts at: 4099 4099 Size: 6722 BstBI TT'CG_AA Cuts at: 5083 5083 Size: 6722 BstEII G'GTnAC_C Cuts at: 1947 2331 1947 Size: 384 6338 BstXI CCAn_nnnn'nTGG Cuts at: 1254 2175 3162 3318 3591 1254 Size: 921 987 156 273 4385 Fragments arranged by size: 4385 987 921 273 156 BstYI r'GATC_y Cuts at: 1 179 257 756 1229 1841 3494 3747 4214 Size: 178 78 499 473 612 1653 253 467 Cuts at: 4214 4237 4572 4818 5830 5916 5928 6274 1 Size: 23 335 246 1012 86 12 346 449 Fragments arranged by size: 1653 1012 612 499 473 467 449 346 335 253 246 178 86 78 23 12 Bsu36I CC'TnA_GG Cuts at: 1422 1422 Size: 6722 BtgI C'CryG_G Cuts at: 957 1379 2783 3161 3411 3590 957 Size: 422 1404 378 250 179 4089 Fragments arranged by size: 4089 1404 422 378 250 179 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 3112 4672 4853 5016 3112 Size: 1560 181 163 4818 Fragments arranged by size: 4818 1560 181 163 BtsI GCAGTG_nn' Cuts at: 527 882 1779 1895 2709 3965 527 Size: 355 897 116 814 1256 3284 Fragments arranged by size: 3284 1256 897 814 355 116 DraI TTT'AAA Cuts at: 3721 3721 Size: 6722 DraIII CAC_nnn'GTG Cuts at: 895 1977 895 Size: 1082 5640 DrdI GACnn_nn'nnGTC Cuts at: 4428 5286 4428 Size: 858 5864 EaeI y'GGCC_r Cuts at: 332 726 1013 1637 1700 2426 2919 3005 3593 Size: 394 287 624 63 726 493 86 588 Cuts at: 3593 4307 4481 4872 4899 6244 332 Size: 714 174 391 27 1345 810 Fragments arranged by size: 1345 810 726 714 624 588 493 394 391 287 174 86 63 27 EagI C'GGCC_G Cuts at: 726 4307 726 Size: 3581 3141 EarI CTCTTCn'nnn_ Cuts at: 244 2017 2198 2677 2968 4745 4955 244 Size: 1773 181 479 291 1777 210 2011 Fragments arranged by size: 2011 1777 1773 479 291 210 181 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 702 4930 5240 5386 6532 702 Size: 4228 310 146 1146 892 Fragments arranged by size: 4228 1146 892 310 146 EcoICRI GAG'CTC Cuts at: 2010 2670 3734 2010 Size: 660 1064 4998 Fragments arranged by size: 4998 1064 660 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 217 499 793 1155 1301 1552 1797 1998 2042 Size: 282 294 362 146 251 245 201 44 Cuts at: 2042 2134 2379 2609 2842 4547 4979 5726 5994 Size: 92 245 230 233 1705 432 747 268 Cuts at: 5994 217 Size: 945 Fragments arranged by size: 1705 945 747 432 362 294 282 268 251 245 245 233 230 201 146 92 44 EcoNI CCTnn'n_nnAGG Cuts at: 1849 2317 1849 Size: 468 6254 EcoO109I rG'GnC_Cy Cuts at: 231 308 309 784 1050 1203 2037 2558 2559 Size: 77 1 475 266 153 834 521 1 Cuts at: 2559 2894 3861 231 Size: 335 967 3092 Fragments arranged by size: 3092 967 834 521 475 335 266 153 77 1 1 EcoRI G'AATT_C Cuts at: 3726 3726 Size: 6722 EcoRV GAT'ATC Cuts at: 738 738 Size: 6722 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4741 4741 Size: 6722 FseI GG_CCGG'CC Cuts at: 2921 2921 Size: 6722 FspI TGC'GCA Cuts at: 2910 4503 2910 Size: 1593 5129 HaeII r_GCGC'y Cuts at: 1182 1779 1791 2294 2394 2994 3382 4156 4404 Size: 597 12 503 100 600 388 774 248 Cuts at: 4404 5426 6405 1182 Size: 1022 979 1499 Fragments arranged by size: 1499 1022 979 774 600 597 503 388 248 100 12 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 242 274 467 499 3486 3518 4564 4594 4596 Size: 32 193 32 2987 32 1046 30 2 Cuts at: 4596 4626 242 Size: 30 2338 Fragments arranged by size: 2987 2338 1046 193 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 3761 3761 Size: 6722 KasI G'GCGC_C Cuts at: 1775 4152 4400 1775 Size: 2377 248 4097 Fragments arranged by size: 4097 2377 248 KpnI G_GTAC'C Cuts at: 3742 3742 Size: 6722 MluI A'CGCG_T Cuts at: 6155 6155 Size: 6722 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 5393 5577 5393 Size: 184 6538 MscI TGG'CCA Cuts at: 334 1015 3595 4483 334 Size: 681 2580 888 2573 Fragments arranged by size: 2580 2573 888 681 MslI CAynn'nnrTG Cuts at: 872 2224 3160 3589 4711 4838 872 Size: 1352 936 429 1122 127 2756 Fragments arranged by size: 2756 1352 1122 936 429 127 MspA1I CmG'CkG Cuts at: 768 1089 1176 1191 2102 2622 2948 3833 4147 Size: 321 87 15 911 520 326 885 314 Cuts at: 4147 4507 5520 5765 768 Size: 360 1013 245 1725 Fragments arranged by size: 1725 1013 911 885 520 360 326 321 314 245 87 15 NaeI GCC'GGC Cuts at: 2919 4903 2919 Size: 1984 4738 NarI GG'CG_CC Cuts at: 1776 4153 4401 1776 Size: 2377 248 4097 Fragments arranged by size: 4097 2377 248 NcoI C'CATG_G Cuts at: 957 3411 957 Size: 2454 4268 NgoMIV G'CCGG_C Cuts at: 2917 4901 2917 Size: 1984 4738 NspI r_CATG'y Cuts at: 1273 1537 1945 2161 2281 2909 3775 4275 5182 Size: 264 408 216 120 628 866 500 907 Cuts at: 5182 1273 Size: 2813 Fragments arranged by size: 2813 907 866 628 500 408 264 216 120 PasI CC'CwG_GG Cuts at: 1371 2337 2712 3237 1371 Size: 966 375 525 4856 Fragments arranged by size: 4856 966 525 375 PciI A'CATG_T Cuts at: 5178 5178 Size: 6722 PflMI CCAn_nnn'nTGG Cuts at: 1857 1944 3712 1857 Size: 87 1768 4867 Fragments arranged by size: 4867 1768 87 PfoI T'CCnGG_A Cuts at: 809 1568 809 Size: 759 5963 PmeI GTTT'AAAC Cuts at: 3721 3721 Size: 6722 PmlI CAC'GTG Cuts at: 3213 3213 Size: 6722 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5861 5893 5861 Size: 32 6690 PpuMI rG'GwC_Cy Cuts at: 784 2037 784 Size: 1253 5469 PspOMI G'GGCC_C Cuts at: 308 2558 2894 3450 308 Size: 2250 336 556 3580 Fragments arranged by size: 3580 2250 556 336 PstI C_TGCA'G Cuts at: 1058 1595 2871 3769 4454 1058 Size: 537 1276 898 685 3326 Fragments arranged by size: 3326 1276 898 685 537 PvuI CG_AT'CG Cuts at: 104 118 104 Size: 14 6708 PvuII CAG'CTG Cuts at: 768 1089 1191 2622 4147 4507 768 Size: 321 102 1431 1525 360 2983 Fragments arranged by size: 2983 1525 1431 360 321 102 RsrII CG'GwC_CG Cuts at: 4917 4917 Size: 6722 SacI G_AGCT'C Cuts at: 2012 2672 3736 2012 Size: 660 1064 4998 Fragments arranged by size: 4998 1064 660 SalI G'TCGA_C Cuts at: 3759 3759 Size: 6722 SanDI GG'GwC_CC Cuts at: 784 784 Size: 6722 SapI GCTCTTCn'nnn_ Cuts at: 244 2017 2198 2677 4745 4955 244 Size: 1773 181 479 2068 210 2011 Fragments arranged by size: 2068 2011 1773 479 210 181 SbfI CC_TGCA'GG Cuts at: 3769 3769 Size: 6722 ScaI AGT'ACT Cuts at: 6239 6239 Size: 6722 SexAI A'CCwGG_T Cuts at: 1973 3699 1973 Size: 1726 4996 SfcI C'TryA_G Cuts at: 33 1054 1591 1693 2473 2867 3182 3765 4450 Size: 1021 537 102 780 394 315 583 685 Cuts at: 4450 5443 5634 33 Size: 993 191 1121 Fragments arranged by size: 1121 1021 993 780 685 583 537 394 315 191 102 SfiI GGCCn_nnn'nGGCC Cuts at: 307 1201 307 Size: 894 5828 SfoI GGC'GCC Cuts at: 1777 4154 4402 1777 Size: 2377 248 4097 Fragments arranged by size: 4097 2377 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6722 SmaI CCC'GGG Cuts at: 2899 3744 2899 Size: 845 5877 SmlI C'TyrA_G Cuts at: 799 2404 3271 3877 4792 5284 5546 799 Size: 1605 867 606 915 492 262 1975 Fragments arranged by size: 1975 1605 915 867 606 492 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6722 SphI G_CATG'C Cuts at: 1273 1537 2281 2909 3775 4275 1273 Size: 264 744 628 866 500 3720 Fragments arranged by size: 3720 866 744 628 500 264 SrfI GCCC'GGGC Cuts at: 2899 2899 Size: 6722 StuI AGG'CCT Cuts at: 844 1427 844 Size: 583 6139 StyI C'CwwG_G Cuts at: 407 702 957 1026 1428 2222 2270 2819 3411 Size: 295 255 69 402 794 48 549 592 Cuts at: 3411 3652 3856 4210 407 Size: 241 204 354 2919 Fragments arranged by size: 2919 794 592 549 402 354 295 255 241 204 69 48 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 2446 2685 3250 3310 3617 4305 4438 4897 5106 Size: 239 565 60 307 688 133 459 209 Cuts at: 5106 2446 Size: 4062 Fragments arranged by size: 4062 688 565 459 307 239 209 133 60 TatI w'GTAC_w Cuts at: 3476 6237 3476 Size: 2761 3961 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 164 196 491 523 727 759 1493 1525 6239 Size: 32 295 32 204 32 734 32 4714 Cuts at: 6239 6271 164 Size: 32 615 Fragments arranged by size: 4714 734 615 295 204 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 3701 4519 3701 Size: 818 5904 XbaI T'CTAG_A Cuts at: 3753 3753 Size: 6722 XcmI CCAnnnn_n'nnnnTGG Cuts at: 184 268 414 1632 1758 2634 2756 4217 184 Size: 84 146 1218 126 876 122 1461 2689 Fragments arranged by size: 2689 1461 1218 876 146 126 122 84 XmaI C'CCGG_G Cuts at: 2897 3742 2897 Size: 845 5877 Enzymes that do cut: AccI Acc65I AclI AcuI AfeI AflIII AgeI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FseI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PspOMI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SmaI SmlI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AarI AatII AflII AhdI AloI AscI AvrII BfrBI BmgBI BmtI BsiWI BsmI BssHII BstZ17I ClaI CspCI FspAI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PshAI PsiI PspXI PsrI SacII SgrAI SnaBI SspI SwaI XhoI XmnI ZraI