Result of FASTA (ccds) for
pF1KE0079
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0079, 616 aa
1>>>pF1KE0079 616 - 616 aa - 616 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4479+/-0.000836; mu= 10.8891+/- 0.050
mean_var=165.7703+/-31.942, 0's: 0 Z-trim(113.5): 38 B-trim: 22 in 1/51
Lambda= 0.099614
statistics sampled from 14108 (14143) to 14108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.434), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS11980.1 TNFRSF11A gene_id:8792|Hs108|chr18 ( 616) 4380 641.6 9e-184
CCDS74227.1 TNFRSF11A gene_id:8792|Hs108|chr18 ( 263) 1888 283.1 3.1e-76
CCDS74228.1 TNFRSF11A gene_id:8792|Hs108|chr18 ( 337) 1763 265.3 9.5e-71
CCDS59324.1 TNFRSF11A gene_id:8792|Hs108|chr18 ( 299) 1502 227.7 1.7e-59
CCDS13393.1 CD40 gene_id:958|Hs108|chr20 ( 277) 548 90.6 3e-18
CCDS13394.1 CD40 gene_id:958|Hs108|chr20 ( 203) 483 81.1 1.5e-15
CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 ( 416) 405 70.2 6.2e-12
CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 ( 435) 405 70.2 6.4e-12
CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 ( 461) 397 69.1 1.5e-11
CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 ( 401) 383 67.0 5.4e-11
>>CCDS11980.1 TNFRSF11A gene_id:8792|Hs108|chr18 (616 aa)
initn: 4380 init1: 4380 opt: 4380 Z-score: 3412.8 bits: 641.6 E(32554): 9e-184
Smith-Waterman score: 4380; 100.0% identity (100.0% similar) in 616 aa overlap (1-616:1-616)
10 20 30 40 50 60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
550 560 570 580 590 600
610
pF1KE0 PEKASRPVQEQGGAKA
::::::::::::::::
CCDS11 PEKASRPVQEQGGAKA
610
>>CCDS74227.1 TNFRSF11A gene_id:8792|Hs108|chr18 (263 aa)
initn: 1888 init1: 1888 opt: 1888 Z-score: 1482.2 bits: 283.1 E(32554): 3.1e-76
Smith-Waterman score: 1888; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
::::::::::::::::::::::
CCDS74 ALTANLWHWINEACGRLSGDKEM
250 260
>>CCDS74228.1 TNFRSF11A gene_id:8792|Hs108|chr18 (337 aa)
initn: 1750 init1: 1750 opt: 1763 Z-score: 1383.7 bits: 265.3 E(32554): 9.5e-71
Smith-Waterman score: 1804; 54.7% identity (54.7% similar) in 616 aa overlap (1-616:1-337)
10 20 30 40 50 60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
:::
CCDS74 ALT---------------------------------------------------------
310 320 330 340 350 360
pF1KE0 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
CCDS74 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE0 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
CCDS74 ------------------------------------------------------------
430 440 450 460 470 480
pF1KE0 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
CCDS74 ------------------------------------------------------------
490 500 510 520 530 540
pF1KE0 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
::::::::::::::::::
CCDS74 ------------------------------------------GNVTGNSNSTFISSGQVM
250 260
550 560 570 580 590 600
pF1KE0 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
270 280 290 300 310 320
610
pF1KE0 PEKASRPVQEQGGAKA
::::::::::::::::
CCDS74 PEKASRPVQEQGGAKA
330
>>CCDS59324.1 TNFRSF11A gene_id:8792|Hs108|chr18 (299 aa)
initn: 1502 init1: 1502 opt: 1502 Z-score: 1181.7 bits: 227.7 E(32554): 1.7e-59
Smith-Waterman score: 1502; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
:::::::::::::::::::::::::
CCDS59 RVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVYVSQTSQE
190 200 210 220 230 240
>--
initn: 630 init1: 630 opt: 630 Z-score: 504.4 bits: 102.4 E(32554): 9e-22
Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 94 aa overlap (523-616:206-299)
500 510 520 530 540 550
pF1KE0 PEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVMNFKGDIIVVYVS
::::::::::::::::::::::::::::::
CCDS59 TFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVYVS
180 190 200 210 220 230
560 570 580 590 600 610
pF1KE0 QTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRPVQEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRPVQEQG
240 250 260 270 280 290
pF1KE0 GAKA
::::
CCDS59 GAKA
>>CCDS13393.1 CD40 gene_id:958|Hs108|chr20 (277 aa)
initn: 525 init1: 287 opt: 548 Z-score: 441.1 bits: 90.6 E(32554): 3e-18
Smith-Waterman score: 548; 37.7% identity (63.6% similar) in 231 aa overlap (14-241:4-226)
10 20 30 40 50
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPP--CTSEKHYEHLGRCCNKCEPGKYMSS
: : :.: . : .:.. :: : ::.: ..::. :.::. . :
CCDS13 MVRLPLQCVLWGCLLTAVHPEPPTACR-EKQYLINSQCCSLCQPGQKLVS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGY
:: ... ::::: .:.::.::.: .: :: :: . .: . :.: : :.: :.
CCDS13 DCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGW
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 H-WSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTF
: :. :: : . :.::.:... .::.:.:: .:.::.. :. .::.:::.:
CCDS13 HCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCET
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 LGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRK
:.. ::.:.:.::. . : : .: .:. .::: . :: ..: : .
CCDS13 KDLVVQQAGTNKTDVVCGPQDRLRA-----LVVIP-IIFGILFA-ILLVLVFIKKVAKKP
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 KGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPE
.::
CCDS13 TNKAPHPKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
230 240 250 260 270
>>CCDS13394.1 CD40 gene_id:958|Hs108|chr20 (203 aa)
initn: 491 init1: 287 opt: 483 Z-score: 392.4 bits: 81.1 E(32554): 1.5e-15
Smith-Waterman score: 483; 40.5% identity (66.9% similar) in 163 aa overlap (14-173:4-165)
10 20 30 40 50
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPP--CTSEKHYEHLGRCCNKCEPGKYMSS
: : :.: . : .:.. :: : ::.: ..::. :.::. . :
CCDS13 MVRLPLQCVLWGCLLTAVHPEPPTACR-EKQYLINSQCCSLCQPGQKLVS
10 20 30 40
60 70 80 90 100 110
pF1KE0 KCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGY
:: ... ::::: .:.::.::.: .: :: :: . .: . :.: : :.: :.
CCDS13 DCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGW
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 H-WSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTF
: :. :: : . :.::.:... .::.:.:: .:.::.. :. .::.:::
CCDS13 HCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 LGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRK
CCDS13 SAESPGGDPHHLRDPVCHPLGAGLYQKGGQEANQ
170 180 190 200
>>CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 (416 aa)
initn: 314 init1: 182 opt: 405 Z-score: 327.7 bits: 70.2 E(32554): 6.2e-12
Smith-Waterman score: 406; 30.3% identity (55.5% similar) in 238 aa overlap (24-246:6-239)
10 20 30 40
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQI-APPCTSE---------KHYEHLGR-CCNK
...: :. .:: .:: ..:: : ::..
CCDS59 MEATGISLASQLKVPPYASENQTCRDQEKEYYEPQHRICCSR
10 20 30 40
50 60 70 80 90 100
pF1KE0 CEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTP
: :: :.:.::. :.:: :. . : . :: : : . :: .: .. .:
CCDS59 CPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKRK
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE0 RRCACTAGYH---WSQDCECCRRNTECAPGLGAQHPLQLNK-DTVCKPCLAGYFSDAFSS
.: : :. :. .: :. ..: :: :. ...: .. : :: ::.:... :
CCDS59 TQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSP
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE0 TDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVAL
. .:.: : : : :: .::..:.. : ::. ..: .. .:: . :
CCDS59 SARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPL-PPEMSGTML--MLAVLLPLAFFL
170 180 190 200 210
230 240 250 260 270 280
pF1KE0 VAAIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGV
. : .:. : :. .: .:
CCDS59 LLATVFS-CIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPI
220 230 240 250 260 270
>>CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 (435 aa)
initn: 314 init1: 182 opt: 405 Z-score: 327.5 bits: 70.2 E(32554): 6.4e-12
Smith-Waterman score: 416; 31.5% identity (54.6% similar) in 251 aa overlap (10-246:16-258)
10 20 30 40
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSE---------KHYEHLGR
:: .: : .::: : : .:: .:: ..:: :
CCDS85 MLLPWATSAPGLAWGPL--VLGLFGLLAASQP--QAVPPYASENQTCRDQEKEYYEPQHR
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 -CCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAG
::..: :: :.:.::. :.:: :. . : . :: : : . :: .: ..
CCDS85 ICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPC
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 NSTTPRRCACTAGYH---WSQDCECCRRNTECAPGLGAQHPLQLNK-DTVCKPCLAGYFS
.: .: : :. :. .: :. ..: :: :. ...: .. : :: ::.:.
CCDS85 TSKRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQ
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 DAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLF
.. : . .:.: : : : :: .::..:.. : ::. ..: .. .::
CCDS85 NTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPL-PPEMSGTML--MLAVLLP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 ASVALVAAIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQG
. :. : .:. : :. .: .:
CCDS85 LAFFLLLATVFS-CIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQ
240 250 260 270 280 290
>>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 (461 aa)
initn: 337 init1: 161 opt: 397 Z-score: 320.9 bits: 69.1 E(32554): 1.5e-11
Smith-Waterman score: 397; 33.5% identity (57.1% similar) in 203 aa overlap (17-212:23-219)
10 20 30 40 50
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGR-CCNKCEPG
: : .: : . . : ...:.. .. ::.:: ::
CCDS14 MAPVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 KYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCL-LHKVCDTGKALVAVVAGNSTTPRRC
.. . :: :::.:: : . : . :: .:: . :.. . : . : . : :
CCDS14 QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQ--VETQACTREQNRIC
70 80 90 100 110
120 130 140 150 160
pF1KE0 ACTAGYH----WSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDK
.: :.. .. :. : .: ::.:. .: ..:.::::: : ::.. ::::
CCDS14 TCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDI
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE0 CRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARK-PPNEPHVYLPGLIILLLFASVALVA
::: :. : :. . ::::.:. :.:. :. :. :
CCDS14 CRPHQICNV----VAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPS
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 AIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLL
CCDS14 TAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCL
240 250 260 270 280 290
>>CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 (401 aa)
initn: 319 init1: 169 opt: 383 Z-score: 310.8 bits: 67.0 E(32554): 5.4e-11
Smith-Waterman score: 383; 34.6% identity (55.5% similar) in 191 aa overlap (16-197:4-188)
10 20 30 40 50
pF1KE0 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGR------CCNKCEPGK
::: :. :..... . : .: : . :.:: ::
CCDS63 MNNLLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGT
10 20 30 40
60 70 80 90 100 110
pF1KE0 YMSSKCTTTSDSVCLPCGPDEYL-DSWNEEDKCLL-HKVCDTGKALVAVVAG-NSTTPRR
:....::. .:: :: ::.: :::. :.:: :: : : : : : :
CCDS63 YLKQHCTAKWKTVCAPC-PDHYYTDSWHTSDECLYCSPVC---KELQYVKQECNRTHNRV
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 CACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRP
: : : . . : : .. : ::.:. . ...:::: : :.::. :: ::
CCDS63 CECKEGRYL--EIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 WTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIF
:::. .: . ..:. : .::..
CCDS63 HTNCSVFGLLLTQKGNATHDNICSGNSESTQKCGIDVTLCEEAFFRFAVPTKFTPNWLSV
170 180 190 200 210 220
616 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:59:08 2016 done: Fri Nov 4 03:59:09 2016
Total Scan time: 3.130 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]