FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0087, 922 aa
  1>>>pF1KE0087 922 - 922 aa - 922 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0552+/-0.00125; mu= 22.2063+/- 0.075
 mean_var=62.1147+/-12.690, 0's: 0 Z-trim(99.8): 36  B-trim: 0 in 0/48
 Lambda= 0.162734
 statistics sampled from 5869 (5875) to 5869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.518), E-opt: 0.2 (0.18), width:  16
 Scan time:  4.130

The best scores are:                                      opt bits E(32554)
CCDS2318.1 PGAP1 gene_id:80055|Hs108|chr2          ( 922) 6104 1442.8       0


>>CCDS2318.1 PGAP1 gene_id:80055|Hs108|chr2               (922 aa)
 initn: 6104 init1: 6104 opt: 6104  Z-score: 7736.3  bits: 1442.8 E(32554):    0
Smith-Waterman score: 6104; 100.0% identity (100.0% similar) in 922 aa overlap (1-922:1-922)

               10        20        30        40        50        60
pF1KE0 MFLHSVNLWNLAFYVFMVFLATLGLWDVFFGFEENKCSMSYMFEYPEYQKIELPKKLAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MFLHSVNLWNLAFYVFMVFLATLGLWDVFFGFEENKCSMSYMFEYPEYQKIELPKKLAKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YPAYELYLYGEGSYAEEHKILPLTGIPVLFLPGNAGSYKQVRSIGSIALRKAEDIDFKYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 YPAYELYLYGEGSYAEEHKILPLTGIPVLFLPGNAGSYKQVRSIGSIALRKAEDIDFKYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDFFSVNFNEELVALYGGSLQKQTKFVHECIKTILKLYKGQEFAPKSVAIIGHSMGGLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FDFFSVNFNEELVALYGGSLQKQTKFVHECIKTILKLYKGQEFAPKSVAIIGHSMGGLVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RALLTLKNFKHDLINLLITQATPHVAPVMPLDRFITDFYTTVNNYWILNARHINLTTLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 RALLTLKNFKHDLINLLITQATPHVAPVMPLDRFITDFYTTVNNYWILNARHINLTTLSV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 AGGFRDYQVRSGLTFLPKLSHHTSALSVVSSAVPKTWVSTDHLSIVWCKQLQLTTVRAFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 AGGFRDYQVRSGLTFLPKLSHHTSALSVVSSAVPKTWVSTDHLSIVWCKQLQLTTVRAFF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 DLIDADTKQITQNSKKKLSVLYHHFIRHPSKHFEENPAIISDLTGTSMWVLVKVSKWTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DLIDADTKQITQNSKKKLSVLYHHFIRHPSKHFEENPAIISDLTGTSMWVLVKVSKWTYV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 AYNESEKIYFTFPLENHRKIYTHVYCQSTMLDTNSWIFACINSTSMCLQGVDLSWKAELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 AYNESEKIYFTFPLENHRKIYTHVYCQSTMLDTNSWIFACINSTSMCLQGVDLSWKAELL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 PTIKYLTLRLQDYPSLSHLVVYVPSVRGSKFVVDCEFFKKEKRYIQLPVTHLFSFGLSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PTIKYLTLRLQDYPSLSHLVVYVPSVRGSKFVVDCEFFKKEKRYIQLPVTHLFSFGLSSR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 KVVLNTNGLYYNLELLNFGQIYQAFKINVVSKCSAVKEEITSIYRLHIPWSYEDSLTIAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KVVLNTNGLYYNLELLNFGQIYQAFKINVVSKCSAVKEEITSIYRLHIPWSYEDSLTIAQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 APSSTEISLKLHIAQPENNTHVALFKMYTSSDCRYEVTVKTSFSQILGQVVRFHGGALPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 APSSTEISLKLHIAQPENNTHVALFKMYTSSDCRYEVTVKTSFSQILGQVVRFHGGALPA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 YVVSNILLAYRGQLYSLFSTGCCLEYATMLDKEAKPYKVDPFVIIIKFLLGYKWFKELWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 YVVSNILLAYRGQLYSLFSTGCCLEYATMLDKEAKPYKVDPFVIIIKFLLGYKWFKELWD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 VLLLPELDAVILTCQSMCFPLISLILFLFGTCTAYWSGLLSSASVRLLSSLWLALKRPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VLLLPELDAVILTCQSMCFPLISLILFLFGTCTAYWSGLLSSASVRLLSSLWLALKRPSE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LPKDIKMISPDLPFLTIVLIIVSWTTCGALAILLSYLYYVFKVVHLQASLTTFKNSQPVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LPKDIKMISPDLPFLTIVLIIVSWTTCGALAILLSYLYYVFKVVHLQASLTTFKNSQPVN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 PKHSRRSEKKSNHHKDSSIHHLRLSANDAEDSLRMHSTVINLLTWIVLLSMPSLIYWLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PKHSRRSEKKSNHHKDSSIHHLRLSANDAEDSLRMHSTVINLLTWIVLLSMPSLIYWLKN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 LRYYFKLNPDPCKPLAFILIPTMAILGNTYTVSIKSSKLLKTTSQFPLPLAVGVIAFGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LRYYFKLNPDPCKPLAFILIPTMAILGNTYTVSIKSSKLLKTTSQFPLPLAVGVIAFGSA
              850       860       870       880       890       900

              910       920  
pF1KE0 HLYRLPCFVFIPLLLHALCNFM
       ::::::::::::::::::::::
CCDS23 HLYRLPCFVFIPLLLHALCNFM
              910       920  




922 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:41:10 2016 done: Fri Nov  4 03:41:11 2016
 Total Scan time:  4.130 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]