Result of FASTA (ccds) for
pF1KE0096
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0096, 1835 aa
1>>>pF1KE0096 1835 - 1835 aa - 1835 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.8562+/-0.00129; mu= -10.5610+/- 0.077
mean_var=443.5206+/-93.571, 0's: 0 Z-trim(110.8): 92 B-trim: 322 in 1/53
Lambda= 0.060900
statistics sampled from 11847 (11909) to 11847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.366), width: 16
Scan time: 5.480
The best scores are: opt bits E(32554)
CCDS31783.1 ARID2 gene_id:196528|Hs108|chr12 (1835) 12195 1087.9 0
>>CCDS31783.1 ARID2 gene_id:196528|Hs108|chr12 (1835 aa)
initn: 12195 init1: 12195 opt: 12195 Z-score: 5807.6 bits: 1087.9 E(32554): 0
Smith-Waterman score: 12195; 100.0% identity (100.0% similar) in 1835 aa overlap (1-1835:1-1835)
10 20 30 40 50 60
pF1KE0 MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QLPIGAIPSSYNYQQHSVSDYLRQSYGLSMDFNSPNDYNKLVLSLLSGLPNEVDFAINVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLPIGAIPSSYNYQQHSVSDYLRQSYGLSMDFNSPNDYNKLVLSLLSGLPNEVDFAINVC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 TLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VDDNEVRDLISDRNKSHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAVILRNLSFEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VDDNEVRDLISDRNKSHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAVILRNLSFEE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 GNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 KCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 VLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLIEHPSSSHQMLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLIEHPSSSHQMLSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 IRPQAIEQVQTQTHVASAPASRAVVAQHVAPPPGIVEIDSEKFACQWLNAHFEVNPDCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IRPQAIEQVQTQTHVASAPASRAVVAQHVAPPPGIVEIDSEKFACQWLNAHFEVNPDCSV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 SRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFPNHTVKRVEDSSSNGQAHIHVVGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFPNHTVKRVEDSSSNGQAHIHVVGVK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 RRAIPLPIQMYYQQQPVSTSVVRVDSVPDVSPAPSPAGIPHGSQTIGNHFQRTPVANQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RRAIPLPIQMYYQQQPVSTSVVRVDSVPDVSPAPSPAGIPHGSQTIGNHFQRTPVANQSS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 NLTATQMSFPVQGVHTVAQTVSRIPQNPSPHTHQQQNAPVTVIQSKAPIPCEVVKATVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NLTATQMSFPVQGVHTVAQTVSRIPQNPSPHTHQQQNAPVTVIQSKAPIPCEVVKATVIQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 NSIPQTGVPVSIAVGGGPPQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQQSPLHTVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NSIPQTGVPVSIAVGGGPPQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQQSPLHTVVP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 GQIPSGTPVTVIQQAVPQSHMFGRVQNIPACTSTVSQGQQLITTSPQPVQTSSQQTSAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GQIPSGTPVTVIQQAVPQSHMFGRVQNIPACTSTVSQGQQLITTSPQPVQTSSQQTSAGS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 QSQDTVIIAPPQYVTTSASNIVSATSVQNFQVATGQMVTIAGVPSPQASRVGFQNIAPKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QSQDTVIIAPPQYVTTSASNIVSATSVQNFQVATGQMVTIAGVPSPQASRVGFQNIAPKP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 LPSQQVSSTVVQQPIQQPQQPTQQSVVIVSQPAQQGQTYAPAIHQIVLANPAALPAGQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPSQQVSSTVVQQPIQQPQQPTQQSVVIVSQPAQQGQTYAPAIHQIVLANPAALPAGQTV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 QLTGQPNITPSSSPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLTGQPNITPSSSPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPA
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE0 PPPQQVQVQVQQPQQVQMQVQPQQSNAGVGQPASGESSLIKQLLLPKRGPSTPGGKLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPPQQVQVQVQQPQQVQMQVQPQQSNAGVGQPASGESSLIKQLLLPKRGPSTPGGKLILP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE0 APQIPPPNNARAPSPQVVYQVASNQAAGFGVQGQTPAQQLLVGQQNVQLVPSAMPPSGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APQIPPPNNARAPSPQVVYQVASNQAAGFGVQGQTPAQQLLVGQQNVQLVPSAMPPSGGV
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE0 QTVPISNLQILPGPLISNSPATIFQGTSGNQVTITVVPNTSFAPATVSQGNATQLIAPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTVPISNLQILPGPLISNSPATIFQGTSGNQVTITVVPNTSFAPATVSQGNATQLIAPAG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE0 ITMSGTQTGVGLPVQTLPATQASPAGQSSCTTATPPFKGDKIICQKEEEAKEATGLHVHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ITMSGTQTGVGLPVQTLPATQASPAGQSSCTTATPPFKGDKIICQKEEEAKEATGLHVHE
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE0 RKIEVMENPSCRRGATNTSNGDTKENEMHVGSLLNGRKYSDSSLPPSNSGKIQSETNQCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RKIEVMENPSCRRGATNTSNGDTKENEMHVGSLLNGRKYSDSSLPPSNSGKIQSETNQCS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE0 LISNGPSLELGENGASGKQNSEQIDMQDIKSDLRKPLVNGICDFDKGDGSHLSKNIPNHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LISNGPSLELGENGASGKQNSEQIDMQDIKSDLRKPLVNGICDFDKGDGSHLSKNIPNHK
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE0 TSNHVGNGEISPMEPQGTLDITQQDTAKGDQLERISNGPVLTLGGSSVSSIQEASNAATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSNHVGNGEISPMEPQGTLDITQQDTAKGDQLERISNGPVLTLGGSSVSSIQEASNAATQ
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KE0 QFSGTDLLNGPLASSLNSDVPQQRPSVVVSPHSTTSVIQGHQIIAVPDSGSKVSHSPALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QFSGTDLLNGPLASSLNSDVPQQRPSVVVSPHSTTSVIQGHQIIAVPDSGSKVSHSPALS
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KE0 SDVRSTNGTAECKTVKRPAEDTDRETVAGIPNKVGVRIVTISDPNNAGCSATMVAVPAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SDVRSTNGTAECKTVKRPAEDTDRETVAGIPNKVGVRIVTISDPNNAGCSATMVAVPAGA
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KE0 DPSTVAKVAIESAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DPSTVAKVAIESAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQ
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KE0 PGDPMRKPGQNFMCLWQSCKKWFQTPSQVFYHAATEHGGKDVYPGQCLWEGCEPFQRQRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGDPMRKPGQNFMCLWQSCKKWFQTPSQVFYHAATEHGGKDVYPGQCLWEGCEPFQRQRF
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KE0 SFITHLQDKHCSKDALLAGLKQDEPGQAGSQKSSTKQPTVGGTSSTPRAQKAIVNHPSAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SFITHLQDKHCSKDALLAGLKQDEPGQAGSQKSSTKQPTVGGTSSTPRAQKAIVNHPSAA
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KE0 LMALRRGSRNLVFRDFTDEKEGPITKHIRLTAALILKNIGKYSECGRRLLKRHENNLSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LMALRRGSRNLVFRDFTDEKEGPITKHIRLTAALILKNIGKYSECGRRLLKRHENNLSVL
1750 1760 1770 1780 1790 1800
1810 1820 1830
pF1KE0 AISNMEASSTLAKCLYELNFTVQSKEQEKDSEMLQ
:::::::::::::::::::::::::::::::::::
CCDS31 AISNMEASSTLAKCLYELNFTVQSKEQEKDSEMLQ
1810 1820 1830
1835 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:24:52 2016 done: Fri Nov 4 03:24:53 2016
Total Scan time: 5.480 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]