FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0099, 267 aa
  1>>>pF1KE0099 267 - 267 aa - 267 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3640+/-0.000985; mu= 7.2476+/- 0.058
 mean_var=185.5333+/-37.661, 0's: 0 Z-trim(111.1): 16  B-trim: 551 in 1/51
 Lambda= 0.094159
 statistics sampled from 12084 (12094) to 12084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.372), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS8378.1 APOA1 gene_id:335|Hs108|chr11           ( 267) 1733 247.2 8.8e-66


>>CCDS8378.1 APOA1 gene_id:335|Hs108|chr11                (267 aa)
 initn: 1733 init1: 1733 opt: 1733  Z-score: 1294.5  bits: 247.2 E(32554): 8.8e-66
Smith-Waterman score: 1733; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KE0 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
              190       200       210       220       230       240

              250       260       
pF1KE0 GLLPVLESFKVSFLSALEEYTKKLNTQ
       :::::::::::::::::::::::::::
CCDS83 GLLPVLESFKVSFLSALEEYTKKLNTQ
              250       260       




267 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:12:51 2016 done: Sat Nov  5 02:12:51 2016
 Total Scan time:  2.590 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]