Result of FASTA (omim) for
pF1KE0099
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0099, 267 aa
1>>>pF1KE0099 267 - 267 aa - 267 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5948+/-0.000442; mu= 6.1068+/- 0.027
mean_var=226.3279+/-45.207, 0's: 0 Z-trim(118.2): 13 B-trim: 639 in 1/55
Lambda= 0.085252
statistics sampled from 30950 (30963) to 30950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.363), width: 16
Scan time: 8.010
The best scores are: opt bits E(85289)
NP_001304947 (OMIM: 105200,107680,604091) apolipop ( 267) 1733 225.6 7.5e-59
NP_001304946 (OMIM: 105200,107680,604091) apolipop ( 267) 1733 225.6 7.5e-59
NP_000030 (OMIM: 105200,107680,604091) apolipoprot ( 267) 1733 225.6 7.5e-59
NP_001304950 (OMIM: 105200,107680,604091) apolipop ( 158) 1006 135.9 4.4e-32
XP_016872658 (OMIM: 144650,145750,606368) PREDICTE ( 366) 232 41.1 0.0034
NP_001160070 (OMIM: 144650,145750,606368) apolipop ( 366) 232 41.1 0.0034
NP_443200 (OMIM: 144650,145750,606368) apolipoprot ( 366) 232 41.1 0.0034
NP_000473 (OMIM: 107690) apolipoprotein A-IV precu ( 396) 228 40.7 0.0051
>>NP_001304947 (OMIM: 105200,107680,604091) apolipoprote (267 aa)
initn: 1733 init1: 1733 opt: 1733 Z-score: 1177.6 bits: 225.6 E(85289): 7.5e-59
Smith-Waterman score: 1733; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)
10 20 30 40 50 60
pF1KE0 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
190 200 210 220 230 240
250 260
pF1KE0 GLLPVLESFKVSFLSALEEYTKKLNTQ
:::::::::::::::::::::::::::
NP_001 GLLPVLESFKVSFLSALEEYTKKLNTQ
250 260
>>NP_001304946 (OMIM: 105200,107680,604091) apolipoprote (267 aa)
initn: 1733 init1: 1733 opt: 1733 Z-score: 1177.6 bits: 225.6 E(85289): 7.5e-59
Smith-Waterman score: 1733; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)
10 20 30 40 50 60
pF1KE0 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
190 200 210 220 230 240
250 260
pF1KE0 GLLPVLESFKVSFLSALEEYTKKLNTQ
:::::::::::::::::::::::::::
NP_001 GLLPVLESFKVSFLSALEEYTKKLNTQ
250 260
>>NP_000030 (OMIM: 105200,107680,604091) apolipoprotein (267 aa)
initn: 1733 init1: 1733 opt: 1733 Z-score: 1177.6 bits: 225.6 E(85289): 7.5e-59
Smith-Waterman score: 1733; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)
10 20 30 40 50 60
pF1KE0 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ
190 200 210 220 230 240
250 260
pF1KE0 GLLPVLESFKVSFLSALEEYTKKLNTQ
:::::::::::::::::::::::::::
NP_000 GLLPVLESFKVSFLSALEEYTKKLNTQ
250 260
>>NP_001304950 (OMIM: 105200,107680,604091) apolipoprote (158 aa)
initn: 1006 init1: 1006 opt: 1006 Z-score: 697.0 bits: 135.9 E(85289): 4.4e-32
Smith-Waterman score: 1006; 100.0% identity (100.0% similar) in 158 aa overlap (110-267:1-158)
80 90 100 110 120 130
pF1KE0 TFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELY
::::::::::::::::::::::::::::::
NP_001 MSKDLEEVKAKVQPYLDDFQKKWQEEMELY
10 20 30
140 150 160 170 180 190
pF1KE0 RQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLA
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 ARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEE
100 110 120 130 140 150
260
pF1KE0 YTKKLNTQ
::::::::
NP_001 YTKKLNTQ
>>XP_016872658 (OMIM: 144650,145750,606368) PREDICTED: a (366 aa)
initn: 228 init1: 176 opt: 232 Z-score: 178.3 bits: 41.1 E(85289): 0.0034
Smith-Waterman score: 238; 25.9% identity (59.9% similar) in 232 aa overlap (3-223:5-216)
10 20 30 40 50
pF1KE0 MKAAVLTLAVLFLTG---SQARH-FWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYV
::::: :. .:.. .:::. :: : :. :. :: :
XP_016 MASMAAVLTWALALLSAFSATQARKGFW--DYFSQTSGDK---------------GR--V
10 20 30 40
60 70 80 90 100 110
pF1KE0 SQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDL
:.. . .... : :. .. ....:. :.: :.. : .. :.:......:
XP_016 EQIHQQKMARE-PATLKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEEL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 EEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR-
:::::..:::. . .. ..: ::...: .:.: . ...::::.: .::. .
XP_016 EEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKA
110 120 130 140 150 160
180 190 200 210 220
pF1KE0 ------DRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTL
:.: : ...:..... .. .... . :.: . : .. : : ... :
XP_016 QLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHAPAS
170 180 190 200 210 220
230 240 250 260
pF1KE0 SEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
XP_016 PARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQMLSEE
230 240 250 260 270 280
>>NP_001160070 (OMIM: 144650,145750,606368) apolipoprote (366 aa)
initn: 228 init1: 176 opt: 232 Z-score: 178.3 bits: 41.1 E(85289): 0.0034
Smith-Waterman score: 238; 25.9% identity (59.9% similar) in 232 aa overlap (3-223:5-216)
10 20 30 40 50
pF1KE0 MKAAVLTLAVLFLTG---SQARH-FWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYV
::::: :. .:.. .:::. :: : :. :. :: :
NP_001 MASMAAVLTWALALLSAFSATQARKGFW--DYFSQTSGDK---------------GR--V
10 20 30 40
60 70 80 90 100 110
pF1KE0 SQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDL
:.. . .... : :. .. ....:. :.: :.. : .. :.:......:
NP_001 EQIHQQKMARE-PATLKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEEL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 EEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR-
:::::..:::. . .. ..: ::...: .:.: . ...::::.: .::. .
NP_001 EEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKA
110 120 130 140 150 160
180 190 200 210 220
pF1KE0 ------DRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTL
:.: : ...:..... .. .... . :.: . : .. : : ... :
NP_001 QLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHAPAS
170 180 190 200 210 220
230 240 250 260
pF1KE0 SEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
NP_001 PARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQMLSEE
230 240 250 260 270 280
>>NP_443200 (OMIM: 144650,145750,606368) apolipoprotein (366 aa)
initn: 228 init1: 176 opt: 232 Z-score: 178.3 bits: 41.1 E(85289): 0.0034
Smith-Waterman score: 238; 25.9% identity (59.9% similar) in 232 aa overlap (3-223:5-216)
10 20 30 40 50
pF1KE0 MKAAVLTLAVLFLTG---SQARH-FWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYV
::::: :. .:.. .:::. :: : :. :. :: :
NP_443 MASMAAVLTWALALLSAFSATQARKGFW--DYFSQTSGDK---------------GR--V
10 20 30 40
60 70 80 90 100 110
pF1KE0 SQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDL
:.. . .... : :. .. ....:. :.: :.. : .. :.:......:
NP_443 EQIHQQKMARE-PATLKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEEL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 EEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR-
:::::..:::. . .. ..: ::...: .:.: . ...::::.: .::. .
NP_443 EEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKA
110 120 130 140 150 160
180 190 200 210 220
pF1KE0 ------DRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTL
:.: : ...:..... .. .... . :.: . : .. : : ... :
NP_443 QLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHAPAS
170 180 190 200 210 220
230 240 250 260
pF1KE0 SEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
NP_443 PARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQMLSEE
230 240 250 260 270 280
>>NP_000473 (OMIM: 107690) apolipoprotein A-IV precursor (396 aa)
initn: 459 init1: 208 opt: 228 Z-score: 175.2 bits: 40.7 E(85289): 0.0051
Smith-Waterman score: 343; 25.5% identity (61.6% similar) in 263 aa overlap (3-265:5-257)
10 20 30 40 50
pF1KE0 MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFE
:.:::::.. ..: :: . :. :: : . :...... : ...
NP_000 MFLKAVVLTLALVAVAG--ARAEVSADQVATVMWD--------YFSQLSNNAKEAVEHLQ
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 GSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVK
: : .::: . :. :.. . :...: : . :. . : :..: :..:..:.:::..
NP_000 KSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFATELHERLAKDSEKLKEEIGKELEELR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 AKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARA
:.. :. .. ..: .... .:..:: .:. . . ..:...:.: ...:. :
NP_000 ARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVSTQAEQLRRQLTPYAQRMERVLRE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 HVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDL
..:.:.. : :..:::. .. .: :: :...: . . : .. : .:
NP_000 NADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDT
180 190 200 210 220 230
240 250 260
pF1KE0 RQGLLPVLESFKVSFLSALEEYTKKLNTQ
.. : ::.. .. . :: ...
NP_000 QEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLA
240 250 260 270 280 290
267 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:12:51 2016 done: Sat Nov 5 02:12:53 2016
Total Scan time: 8.010 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]