FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0106, 281 aa
  1>>>pF1KE0106 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8353+/-0.000642; mu= 10.1383+/- 0.039
 mean_var=114.2802+/-23.008, 0's: 0 Z-trim(115.3): 6  B-trim: 639 in 1/52
 Lambda= 0.119974
 statistics sampled from 15893 (15898) to 15893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.488), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS8514.1 NRIP2 gene_id:83714|Hs108|chr12         ( 281) 1919 341.9 3.2e-94
CCDS31422.1 NRIP3 gene_id:56675|Hs108|chr11        ( 241)  391 77.3 1.1e-14


>>CCDS8514.1 NRIP2 gene_id:83714|Hs108|chr12              (281 aa)
 initn: 1919 init1: 1919 opt: 1919  Z-score: 1805.2  bits: 341.9 E(32554): 3.2e-94
Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KE0 MLFIFPLSLPWRPSCWKESCSTGQRQAGRSREDSVTPPPSSPWPTPPAGAMSTKQEARRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MLFIFPLSLPWRPSCWKESCSTGQRQAGRSREDSVTPPPSSPWPTPPAGAMSTKQEARRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSADLLPLDSLKRLGTSKDLQPRSVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 EGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSADLLPLDSLKRLGTSKDLQPRSVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QRRLVEGNPNWLQGEPPRMQDLIHGQESRRKTSRTEIPALLVNCKCQDQLLRVAVDTGTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QRRLVEGNPNWLQGEPPRMQDLIHGQESRRKTSRTEIPALLVNCKCQDQLLRVAVDTGTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YNRISAGCLSRLGLEKRVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDAESPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 YNRISAGCLSRLGLEKRVLKASAGDLAPGPPTQVEQLELQLGQETVVCSAQVVDAESPEF
              190       200       210       220       230       240

              250       260       270       280 
pF1KE0 CLGLQTLLSLKCCIDLEHGVLRLKAPFSELPFLPLYQEPGQ
       :::::::::::::::::::::::::::::::::::::::::
CCDS85 CLGLQTLLSLKCCIDLEHGVLRLKAPFSELPFLPLYQEPGQ
              250       260       270       280 

>>CCDS31422.1 NRIP3 gene_id:56675|Hs108|chr11             (241 aa)
 initn: 494 init1: 287 opt: 391  Z-score: 376.8  bits: 77.3 E(32554): 1.1e-14
Smith-Waterman score: 507; 42.2% identity (70.6% similar) in 218 aa overlap (69-273:13-228)

       40        50        60        70        80        90        
pF1KE0 PSSPWPTPPAGAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSAD
                                     .:...:. : : ::::.:::.::.::::::
CCDS31                   MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSAD
                                 10        20        30        40  

      100       110       120       130            140        150  
pF1KE0 LLPLDSLKRLGTSKDLQPRSVIQRRLVEGNPNWLQGEP--P---RMQDLIHGQ-ESRRKT
       :::::.::.::.:::.::....::::.: : . :.. :  :   . . : ... :. .:.
CCDS31 LLPLDGLKKLGSSKDMQPHNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKS
             50        60        70        80        90       100  

            160       170       180       190       200        210 
pF1KE0 SRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKAS-AGDLAPGPP
        . ..  .::.:.:  . ... ::::  :: :: .:..::::...: . .  :.    : 
CCDS31 EEDDM--ILVSCQCAGKDVKALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPR
              110       120       130       140       150       160

                  220       230       240       250        260     
pF1KE0 T-----QVEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLE-HGVLRLKA
             :.:.: . ::.  . : : ::: .  .. :::::: :::: :.:. : ..  :.
CCDS31 HLKVVGQIEHLVITLGSLRLDCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKT
              170       180       190       200       210       220

         270       280      
pF1KE0 PFSELPFLPLYQEPGQ     
          :.::.             
CCDS31 DKEEIPFVETVSLNEDNTSEA
              230       240 




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:58:03 2016 done: Fri Nov  4 02:58:04 2016
 Total Scan time:  2.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]