FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0111, 346 aa
  1>>>pF1KE0111 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9186+/-0.000717; mu= 7.7474+/- 0.044
 mean_var=183.4413+/-37.218, 0's: 0 Z-trim(116.8): 3  B-trim: 430 in 1/54
 Lambda= 0.094695
 statistics sampled from 17456 (17459) to 17456 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.536), width:  16
 Scan time:  3.430

The best scores are:                                      opt bits E(32554)
CCDS10844.1 ENKD1 gene_id:84080|Hs108|chr16        ( 346) 2369 334.9 6.1e-92


>>CCDS10844.1 ENKD1 gene_id:84080|Hs108|chr16             (346 aa)
 initn: 2369 init1: 2369 opt: 2369  Z-score: 1764.1  bits: 334.9 E(32554): 6.1e-92
Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KE0 MCEGPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MCEGPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR
              250       260       270       280       290       300

              310       320       330       340      
pF1KE0 ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD
              310       320       330       340      




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:44:05 2016 done: Fri Nov  4 02:44:06 2016
 Total Scan time:  3.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]