FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0112, 195 aa
  1>>>pF1KE0112 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9364+/-0.00083; mu= -0.2222+/- 0.051
 mean_var=234.9993+/-47.030, 0's: 0 Z-trim(116.8): 7  B-trim: 218 in 2/49
 Lambda= 0.083664
 statistics sampled from 17420 (17426) to 17420 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.535), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS361.1 MARCKSL1 gene_id:65108|Hs108|chr1        ( 195) 1284 166.3 1.1e-41


>>CCDS361.1 MARCKSL1 gene_id:65108|Hs108|chr1             (195 aa)
 initn: 1284 init1: 1284 opt: 1284  Z-score: 861.9  bits: 166.3 E(32554): 1.1e-41
Smith-Waterman score: 1284; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE0 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS
              130       140       150       160       170       180

              190     
pF1KE0 GPESGPTPASAEQNE
       :::::::::::::::
CCDS36 GPESGPTPASAEQNE
              190     




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:33:27 2016 done: Fri Nov  4 02:33:27 2016
 Total Scan time:  2.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]