FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0112, 195 aa
  1>>>pF1KE0112 195 - 195 aa - 195 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5045+/-0.000331; mu= -3.9245+/- 0.021
 mean_var=249.4918+/-50.834, 0's: 0 Z-trim(124.5): 8  B-trim: 1229 in 2/53
 Lambda= 0.081198
 statistics sampled from 46274 (46283) to 46274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.543), width:  16
 Scan time:  6.380

The best scores are:                                      opt bits E(85289)
NP_075385 (OMIM: 602940) MARCKS-related protein [H ( 195) 1284 161.9 5.8e-40
NP_002347 (OMIM: 177061) myristoylated alanine-ric ( 332)  310 48.0   2e-05


>>NP_075385 (OMIM: 602940) MARCKS-related protein [Homo   (195 aa)
 initn: 1284 init1: 1284 opt: 1284  Z-score: 838.4  bits: 161.9 E(85289): 5.8e-40
Smith-Waterman score: 1284; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE0 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS
              130       140       150       160       170       180

              190     
pF1KE0 GPESGPTPASAEQNE
       :::::::::::::::
NP_075 GPESGPTPASAEQNE
              190     

>>NP_002347 (OMIM: 177061) myristoylated alanine-rich C-  (332 aa)
 initn: 359 init1: 163 opt: 310  Z-score: 218.6  bits: 48.0 E(85289): 2e-05
Smith-Waterman score: 310; 36.3% identity (58.2% similar) in 201 aa overlap (4-195:71-263)

                                          10        20        30   
pF1KE0                            MGSQSSKAPRGDVTAEEAAGASPAKANGQENGH
                                     . . :  : ..   :  . :: : . : : 
NP_002 VNGDASPAAAESGAKEELQANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGA
               50        60        70        80        90       100

            40          50        60        70        80        90 
pF1KE0 VKSNGDLSPKGEGESP--PVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKK
          . .   .::.  :  :. .  :::.:....  :   . ::  .   : .::::::::
NP_002 SPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAED-GATPS---PSNETPKKKKK
              110       120       130       140           150      

              100       110       120          130       140       
pF1KE0 -FSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEE---EQEQGEIGACSDEGTAQEGKAAA
        ::::: :::::.:::.:.::.:  . : .:. :   ..  :  .: . :. :  :. ::
NP_002 RFSFKKSFKLSGFSFKKNKKEAGEGGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAA
        160       170       180       190       200       210      

       150       160        170         180       190              
pF1KE0 TPESQEPQAKGAEASAASE-EEAGPQ--ATEPSTPSGPESGPTPASAEQNE         
       .:   :  : : :..:... .:: ::  :. :  :  : :  : :. : ..         
NP_002 AP--GEEAAAGEEGAAGGDPQEAKPQEAAVAPEKP--PASDETKAAEEPSKVEEKKAEEA
          220       230       240         250       260       270  

NP_002 GASAAACEAPSAAGPGAPPEQEAAPAEEPAAAAASSACAAPSQEAQPECSPEAPPAEAAE
            280       290       300       310       320       330  




195 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:33:28 2016 done: Fri Nov  4 02:33:29 2016
 Total Scan time:  6.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]