FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0113, 88 aa
  1>>>pF1KE0113 88 - 88 aa - 88 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5108+/-0.000276; mu= 12.3445+/- 0.017
 mean_var=51.1793+/-10.294, 0's: 0 Z-trim(118.9): 6  B-trim: 641 in 1/54
 Lambda= 0.179278
 statistics sampled from 32433 (32438) to 32433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.38), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(85289)
NP_003489 (OMIM: 603032) stannin [Homo sapiens]    (  88)  582 157.3   3e-39
XP_016879231 (OMIM: 603032) PREDICTED: stannin iso (  88)  582 157.3   3e-39
XP_016879230 (OMIM: 603032) PREDICTED: stannin iso ( 134)  582 157.4 4.2e-39


>>NP_003489 (OMIM: 603032) stannin [Homo sapiens]         (88 aa)
 initn: 582 init1: 582 opt: 582  Z-score: 825.6  bits: 157.3 E(85289): 3e-39
Smith-Waterman score: 582; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE0 MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF
               10        20        30        40        50        60

               70        80        
pF1KE0 LLVQYSAKGPCVERKAKLMTPNGPEVHG
       ::::::::::::::::::::::::::::
NP_003 LLVQYSAKGPCVERKAKLMTPNGPEVHG
               70        80        

>>XP_016879231 (OMIM: 603032) PREDICTED: stannin isoform  (88 aa)
 initn: 582 init1: 582 opt: 582  Z-score: 825.6  bits: 157.3 E(85289): 3e-39
Smith-Waterman score: 582; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE0 MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF
               10        20        30        40        50        60

               70        80        
pF1KE0 LLVQYSAKGPCVERKAKLMTPNGPEVHG
       ::::::::::::::::::::::::::::
XP_016 LLVQYSAKGPCVERKAKLMTPNGPEVHG
               70        80        

>>XP_016879230 (OMIM: 603032) PREDICTED: stannin isoform  (134 aa)
 initn: 582 init1: 582 opt: 582  Z-score: 822.9  bits: 157.4 E(85289): 4.2e-39
Smith-Waterman score: 582; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:47-134)

                                             10        20        30
pF1KE0                               MSIMDHSPTTGVVTVIVILIAIAALGALIL
                                     ::::::::::::::::::::::::::::::
XP_016 QGTPVSSLSSSLTEWPPPKCCQPRKPPALTMSIMDHSPTTGVVTVIVILIAIAALGALIL
         20        30        40        50        60        70      

               40        50        60        70        80        
pF1KE0 GCWCYLRLQRISQSEDEESIVGDGETKEPFLLVQYSAKGPCVERKAKLMTPNGPEVHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCWCYLRLQRISQSEDEESIVGDGETKEPFLLVQYSAKGPCVERKAKLMTPNGPEVHG
         80        90       100       110       120       130    




88 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:32:23 2016 done: Fri Nov  4 02:32:24 2016
 Total Scan time:  3.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]