FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0114, 308 aa
  1>>>pF1KE0114 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2366+/-0.000681; mu= 15.8358+/- 0.041
 mean_var=62.4519+/-12.260, 0's: 0 Z-trim(109.6): 16  B-trim: 0 in 0/51
 Lambda= 0.162294
 statistics sampled from 11015 (11022) to 11015 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.339), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS12387.1 COPE gene_id:11316|Hs108|chr19         ( 308) 2016 480.2 8.5e-136
CCDS12389.1 COPE gene_id:11316|Hs108|chr19         ( 256) 1242 299.0 2.6e-81
CCDS12388.1 COPE gene_id:11316|Hs108|chr19         ( 257) 1050 254.0 8.9e-68
CCDS82321.1 COPE gene_id:11316|Hs108|chr19         ( 331) 1047 253.4 1.8e-67


>>CCDS12387.1 COPE gene_id:11316|Hs108|chr19              (308 aa)
 initn: 2016 init1: 2016 opt: 2016  Z-score: 2551.5  bits: 480.2 E(32554): 8.5e-136
Smith-Waterman score: 2016; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
              250       260       270       280       290       300

               
pF1KE0 VLQYAPSA
       ::::::::
CCDS12 VLQYAPSA
               

>>CCDS12389.1 COPE gene_id:11316|Hs108|chr19              (256 aa)
 initn: 1242 init1: 1242 opt: 1242  Z-score: 1573.3  bits: 299.0 E(32554): 2.6e-81
Smith-Waterman score: 1547; 83.1% identity (83.1% similar) in 308 aa overlap (1-308:1-256)

               10        20        30        40        50        60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
       :::::::::::::                                               
CCDS12 LTQLATAWVSLAT-----------------------------------------------
              190                                                  

              250       260       270       280       290       300
pF1KE0 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 -----DSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
                200       210       220       230       240        

               
pF1KE0 VLQYAPSA
       ::::::::
CCDS12 VLQYAPSA
      250      

>>CCDS12388.1 COPE gene_id:11316|Hs108|chr19              (257 aa)
 initn: 1045 init1: 1045 opt: 1050  Z-score: 1330.3  bits: 254.0 E(32554): 8.9e-68
Smith-Waterman score: 1570; 83.1% identity (83.1% similar) in 308 aa overlap (1-308:1-257)

               10        20        30        40        50        60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
       ::::::::::::::::::::::::::::::::::::                        
CCDS12 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRS-----------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
                                   ::::::::::::::::::::::::::::::::
CCDS12 ----------------------------TAMTVQILLKLDRLDLARKELKRMQDLDEDAT
                                   100       110       120         

              190       200       210       220       230       240
pF1KE0 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
     130       140       150       160       170       180         

              250       260       270       280       290       300
pF1KE0 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
     190       200       210       220       230       240         

               
pF1KE0 VLQYAPSA
       ::::::::
CCDS12 VLQYAPSA
     250       

>>CCDS82321.1 COPE gene_id:11316|Hs108|chr19              (331 aa)
 initn: 1989 init1: 1045 opt: 1047  Z-score: 1324.8  bits: 253.4 E(32554): 1.8e-67
Smith-Waterman score: 1943; 92.7% identity (92.7% similar) in 331 aa overlap (1-308:1-331)

               10        20        30        40        50        60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
               70        80        90       100       110       120

              130       140                              150       
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLE-----------------------CTAMTVQILL
       :::::::::::::::::::::::::::                        :::::::::
CCDS82 LMAASIYLHDQNPDAALRALHQGDSLEWVSSPGRALHLEAQPMEAASPDGRTAMTVQILL
              130       140       150       160       170       180

       160       170       180       190       200       210       
pF1KE0 KLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLL
              190       200       210       220       230       240

       220       230       240       250       260       270       
pF1KE0 LLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL
              250       260       270       280       290       300

       280       290       300        
pF1KE0 KDAHRSHPFIKEYQAKENDFDRLVLQYAPSA
       :::::::::::::::::::::::::::::::
CCDS82 KDAHRSHPFIKEYQAKENDFDRLVLQYAPSA
              310       320       330 




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:31:22 2016 done: Fri Nov  4 02:31:22 2016
 Total Scan time:  2.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]