Result of FASTA (omim) for
pF1KE0114
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0114, 308 aa
1>>>pF1KE0114 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1888+/-0.000314; mu= 16.1225+/- 0.020
mean_var=66.6234+/-13.630, 0's: 0 Z-trim(116.6): 11 B-trim: 616 in 1/53
Lambda= 0.157131
statistics sampled from 27901 (27910) to 27901 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.327), width: 16
Scan time: 7.830
The best scores are: opt bits E(85289)
NP_009194 (OMIM: 606942) coatomer subunit epsilon ( 308) 2016 465.6 5.6e-131
NP_955476 (OMIM: 606942) coatomer subunit epsilon ( 256) 1242 290.1 3.2e-78
NP_955474 (OMIM: 606942) coatomer subunit epsilon ( 257) 1050 246.6 4e-65
NP_001317398 (OMIM: 606942) coatomer subunit epsil ( 331) 1047 245.9 8e-65
XP_011525958 (OMIM: 606942) PREDICTED: coatomer su ( 279) 958 225.7 8.2e-59
>>NP_009194 (OMIM: 606942) coatomer subunit epsilon isof (308 aa)
initn: 2016 init1: 2016 opt: 2016 Z-score: 2472.4 bits: 465.6 E(85289): 5.6e-131
Smith-Waterman score: 2016; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
250 260 270 280 290 300
pF1KE0 VLQYAPSA
::::::::
NP_009 VLQYAPSA
>>NP_955476 (OMIM: 606942) coatomer subunit epsilon isof (256 aa)
initn: 1242 init1: 1242 opt: 1242 Z-score: 1525.3 bits: 290.1 E(85289): 3.2e-78
Smith-Waterman score: 1547; 83.1% identity (83.1% similar) in 308 aa overlap (1-308:1-256)
10 20 30 40 50 60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
:::::::::::::
NP_955 LTQLATAWVSLAT-----------------------------------------------
190
250 260 270 280 290 300
pF1KE0 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 -----DSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
200 210 220 230 240
pF1KE0 VLQYAPSA
::::::::
NP_955 VLQYAPSA
250
>>NP_955474 (OMIM: 606942) coatomer subunit epsilon isof (257 aa)
initn: 1045 init1: 1045 opt: 1050 Z-score: 1290.1 bits: 246.6 E(85289): 4e-65
Smith-Waterman score: 1570; 83.1% identity (83.1% similar) in 308 aa overlap (1-308:1-257)
10 20 30 40 50 60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
::::::::::::::::::::::::::::::::::::
NP_955 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRS-----------------------
70 80 90
130 140 150 160 170 180
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT
::::::::::::::::::::::::::::::::
NP_955 ----------------------------TAMTVQILLKLDRLDLARKELKRMQDLDEDAT
100 110 120
190 200 210 220 230 240
pF1KE0 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 LTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQ
130 140 150 160 170 180
250 260 270 280 290 300
pF1KE0 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 EALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRL
190 200 210 220 230 240
pF1KE0 VLQYAPSA
::::::::
NP_955 VLQYAPSA
250
>>NP_001317398 (OMIM: 606942) coatomer subunit epsilon i (331 aa)
initn: 1989 init1: 1045 opt: 1047 Z-score: 1284.8 bits: 245.9 E(85289): 8e-65
Smith-Waterman score: 1943; 92.7% identity (92.7% similar) in 331 aa overlap (1-308:1-331)
10 20 30 40 50 60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
70 80 90 100 110 120
130 140 150
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLE-----------------------CTAMTVQILL
::::::::::::::::::::::::::: :::::::::
NP_001 LMAASIYLHDQNPDAALRALHQGDSLEWVSSPGRALHLEAQPMEAASPDGRTAMTVQILL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 KLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 LLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL
250 260 270 280 290 300
280 290 300
pF1KE0 KDAHRSHPFIKEYQAKENDFDRLVLQYAPSA
:::::::::::::::::::::::::::::::
NP_001 KDAHRSHPFIKEYQAKENDFDRLVLQYAPSA
310 320 330
>>XP_011525958 (OMIM: 606942) PREDICTED: coatomer subuni (279 aa)
initn: 1366 init1: 958 opt: 958 Z-score: 1176.8 bits: 225.7 E(85289): 8.2e-59
Smith-Waterman score: 1474; 77.0% identity (77.0% similar) in 331 aa overlap (1-308:1-279)
10 20 30 40 50 60
pF1KE0 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL
70 80 90 100 110 120
130 140 150
pF1KE0 LMAASIYLHDQNPDAALRALHQGDSLE-----------------------CTAMTVQILL
::::::::::::::::::::::::::: :::::::::
XP_011 LMAASIYLHDQNPDAALRALHQGDSLEWVSSPGRALHLEAQPMEAASPDGRTAMTVQILL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 KLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLL
::::::::::::::::::::::::::::::::::::
XP_011 KLDRLDLARKELKRMQDLDEDATLTQLATAWVSLAT------------------------
190 200 210
220 230 240 250 260 270
pF1KE0 LLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL
::::::::::::::::::::::::::::::::
XP_011 ----------------------------DSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL
220 230 240
280 290 300
pF1KE0 KDAHRSHPFIKEYQAKENDFDRLVLQYAPSA
:::::::::::::::::::::::::::::::
XP_011 KDAHRSHPFIKEYQAKENDFDRLVLQYAPSA
250 260 270
308 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:31:23 2016 done: Fri Nov 4 02:31:24 2016
Total Scan time: 7.830 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]