FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0116, 390 aa
  1>>>pF1KE0116 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0988+/-0.00121; mu= -5.0135+/- 0.071
 mean_var=292.6377+/-60.436, 0's: 0 Z-trim(109.3): 40  B-trim: 85 in 1/52
 Lambda= 0.074974
 statistics sampled from 10734 (10759) to 10734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS1000.1 TUFT1 gene_id:7286|Hs108|chr1           ( 390) 2501 284.2 1.4e-76
CCDS44223.1 TUFT1 gene_id:7286|Hs108|chr1          ( 365) 2198 251.4 9.8e-67


>>CCDS1000.1 TUFT1 gene_id:7286|Hs108|chr1                (390 aa)
 initn: 2501 init1: 2501 opt: 2501  Z-score: 1488.3  bits: 284.2 E(32554): 1.4e-76
Smith-Waterman score: 2501; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KE0 MNGTRNWCTLVDVHPEDQAAGSVDILRLTLQGELTGDELEHIAQKAGRKTYAMVSSHSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MNGTRNWCTLVDVHPEDQAAGSVDILRLTLQGELTGDELEHIAQKAGRKTYAMVSSHSAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HSLASELVESHDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HSLASELVESHDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SSKLDRNLGDSLHRQEIQVVLEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSKLDRNLGDSLHRQEIQVVLEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGME
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TEHQALLAKVREGEVALEELRSNNADCQAEREKAATLEKEVAGLREKIHHLDDMLKSQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TEHQALLAKVREGEVALEELRSNNADCQAEREKAATLEKEVAGLREKIHHLDDMLKSQQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQ
              310       320       330       340       350       360

              370       380       390
pF1KE0 ARAKTENPGSIRISKPPSPKPMPVIRVVET
       ::::::::::::::::::::::::::::::
CCDS10 ARAKTENPGSIRISKPPSPKPMPVIRVVET
              370       380       390

>>CCDS44223.1 TUFT1 gene_id:7286|Hs108|chr1               (365 aa)
 initn: 2332 init1: 2198 opt: 2198  Z-score: 1311.6  bits: 251.4 E(32554): 9.8e-67
Smith-Waterman score: 2286; 93.6% identity (93.6% similar) in 390 aa overlap (1-390:1-365)

               10        20        30        40        50        60
pF1KE0 MNGTRNWCTLVDVHPEDQAAGSVDILRLTLQGELTGDELEHIAQKAGRKTYAMVSSHSAG
       ::::::::::::::::::::                         :::::::::::::::
CCDS44 MNGTRNWCTLVDVHPEDQAA-------------------------AGRKTYAMVSSHSAG
               10        20                                 30     

               70        80        90       100       110       120
pF1KE0 HSLASELVESHDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HSLASELVESHDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDI
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KE0 SSKLDRNLGDSLHRQEIQVVLEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSKLDRNLGDSLHRQEIQVVLEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLL
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KE0 AKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGME
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KE0 TEHQALLAKVREGEVALEELRSNNADCQAEREKAATLEKEVAGLREKIHHLDDMLKSQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TEHQALLAKVREGEVALEELRSNNADCQAEREKAATLEKEVAGLREKIHHLDDMLKSQQR
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KE0 KVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQ
         280       290       300       310       320       330     

              370       380       390
pF1KE0 ARAKTENPGSIRISKPPSPKPMPVIRVVET
       ::::::::::::::::::::::::::::::
CCDS44 ARAKTENPGSIRISKPPSPKPMPVIRVVET
         340       350       360     




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:24:05 2016 done: Fri Nov  4 02:24:06 2016
 Total Scan time:  3.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]