FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0120, 287 aa
  1>>>pF1KE0120 287 - 287 aa - 287 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2050+/-0.000846; mu= 15.8055+/- 0.051
 mean_var=60.9686+/-11.945, 0's: 0 Z-trim(106.0): 15  B-trim: 2 in 1/50
 Lambda= 0.164256
 statistics sampled from 8709 (8710) to 8709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS10523.1 ROGDI gene_id:79641|Hs108|chr16        ( 287) 1885 455.0 2.8e-128


>>CCDS10523.1 ROGDI gene_id:79641|Hs108|chr16             (287 aa)
 initn: 1885 init1: 1885 opt: 1885  Z-score: 2416.4  bits: 455.0 E(32554): 2.8e-128
Smith-Waterman score: 1885; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KE0 MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLE
              190       200       210       220       230       240

              250       260       270       280       
pF1KE0 VSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSSYWSYRPF
              250       260       270       280       




287 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:12:15 2016 done: Fri Nov  4 02:12:16 2016
 Total Scan time:  2.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]