FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0121, 127 aa
  1>>>pF1KE0121 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8172+/-0.000689; mu= 12.9079+/- 0.041
 mean_var=56.0587+/-11.480, 0's: 0 Z-trim(108.6): 9  B-trim: 0 in 0/49
 Lambda= 0.171298
 statistics sampled from 10326 (10329) to 10326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.317), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS1266.1 MPC2 gene_id:25874|Hs108|chr1           ( 127)  860 220.0   3e-58


>>CCDS1266.1 MPC2 gene_id:25874|Hs108|chr1                (127 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1159.2  bits: 220.0 E(32554): 3e-58
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KE0 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
               70        80        90       100       110       120

              
pF1KE0 LKAKAHK
       :::::::
CCDS12 LKAKAHK
              




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:08:59 2016 done: Fri Nov  4 02:08:59 2016
 Total Scan time:  1.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]