FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0123, 289 aa
  1>>>pF1KE0123 289 - 289 aa - 289 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6789+/-0.000794; mu= 10.2753+/- 0.048
 mean_var=96.8531+/-19.226, 0's: 0 Z-trim(110.5): 5  B-trim: 3 in 1/51
 Lambda= 0.130322
 statistics sampled from 11685 (11686) to 11685 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.359), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS32585.1 ATPAF2 gene_id:91647|Hs108|chr17       ( 289) 1906 368.0 4.6e-102


>>CCDS32585.1 ATPAF2 gene_id:91647|Hs108|chr17            (289 aa)
 initn: 1906 init1: 1906 opt: 1906  Z-score: 1945.8  bits: 368.0 E(32554): 4.6e-102
Smith-Waterman score: 1906; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KE0 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
              190       200       210       220       230       240

              250       260       270       280         
pF1KE0 EEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHKLLKE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHKLLKE
              250       260       270       280         




289 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:06:32 2016 done: Fri Nov  4 02:06:33 2016
 Total Scan time:  2.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]