Result of FASTA (omim) for
pF1KE0123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0123, 289 aa
1>>>pF1KE0123 289 - 289 aa - 289 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2279+/-0.000318; mu= 12.6140+/- 0.020
mean_var=96.4904+/-19.421, 0's: 0 Z-trim(117.7): 5 B-trim: 0 in 0/58
Lambda= 0.130567
statistics sampled from 29967 (29972) to 29967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.351), width: 16
Scan time: 7.600
The best scores are: opt bits E(85289)
NP_663729 (OMIM: 604273,608918) ATP synthase mitoc ( 289) 1906 368.7 7.3e-102
XP_005256905 (OMIM: 604273,608918) PREDICTED: ATP ( 256) 1607 312.3 6e-85
XP_011522367 (OMIM: 604273,608918) PREDICTED: ATP ( 263) 1604 311.8 9e-85
XP_016880791 (OMIM: 604273,608918) PREDICTED: ATP ( 189) 1169 229.8 3.2e-60
XP_016880792 (OMIM: 604273,608918) PREDICTED: ATP ( 163) 867 172.8 3.8e-43
>>NP_663729 (OMIM: 604273,608918) ATP synthase mitochond (289 aa)
initn: 1906 init1: 1906 opt: 1906 Z-score: 1949.7 bits: 368.7 E(85289): 7.3e-102
Smith-Waterman score: 1906; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)
10 20 30 40 50 60
pF1KE0 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
190 200 210 220 230 240
250 260 270 280
pF1KE0 EEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHKLLKE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 EEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHKLLKE
250 260 270 280
>>XP_005256905 (OMIM: 604273,608918) PREDICTED: ATP synt (256 aa)
initn: 1635 init1: 1607 opt: 1607 Z-score: 1646.1 bits: 312.3 E(85289): 6e-85
Smith-Waterman score: 1607; 99.2% identity (99.6% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE0 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
190 200 210 220 230 240
250 260 270 280
pF1KE0 EEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHKLLKE
:::: .:
XP_005 EEYQKSKSRTSRSIVK
250
>>XP_011522367 (OMIM: 604273,608918) PREDICTED: ATP synt (263 aa)
initn: 1604 init1: 1604 opt: 1604 Z-score: 1642.9 bits: 311.8 E(85289): 9e-85
Smith-Waterman score: 1604; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE0 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLE
190 200 210 220 230 240
250 260 270 280
pF1KE0 EEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHKLLKE
::::
XP_011 EEYQGGFPCQLEKFIQPARMAWD
250 260
>>XP_016880791 (OMIM: 604273,608918) PREDICTED: ATP synt (189 aa)
initn: 1169 init1: 1169 opt: 1169 Z-score: 1202.1 bits: 229.8 E(85289): 3.2e-60
Smith-Waterman score: 1169; 100.0% identity (100.0% similar) in 181 aa overlap (109-289:9-189)
80 90 100 110 120 130
pF1KE0 FTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTD
::::::::::::::::::::::::::::::
XP_016 MSASHRVKTTLCNTSLDNPTQRNKDQLIRAAVKFLDTD
10 20 30
140 150 160 170 180 190
pF1KE0 TICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLAS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 YNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYE
100 110 120 130 140 150
260 270 280
pF1KE0 LQELRARTAAGTLFIHLCSESTTVKHKLLKE
:::::::::::::::::::::::::::::::
XP_016 LQELRARTAAGTLFIHLCSESTTVKHKLLKE
160 170 180
>>XP_016880792 (OMIM: 604273,608918) PREDICTED: ATP synt (163 aa)
initn: 867 init1: 867 opt: 867 Z-score: 895.6 bits: 172.8 E(85289): 3.8e-43
Smith-Waterman score: 867; 100.0% identity (100.0% similar) in 136 aa overlap (109-244:9-144)
80 90 100 110 120 130
pF1KE0 FTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTD
::::::::::::::::::::::::::::::
XP_016 MSASHRVKTTLCNTSLDNPTQRNKDQLIRAAVKFLDTD
10 20 30
140 150 160 170 180 190
pF1KE0 TICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLAS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 YNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYE
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQGGFPCQLEKFIQPA
100 110 120 130 140 150
260 270 280
pF1KE0 LQELRARTAAGTLFIHLCSESTTVKHKLLKE
XP_016 RMAWD
160
289 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:06:33 2016 done: Fri Nov 4 02:06:34 2016
Total Scan time: 7.600 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]