Result of FASTA (ccds) for
pF1KE0125
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0125, 121 aa
1>>>pF1KE0125 121 - 121 aa - 121 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3537+/-0.000701; mu= 9.8374+/- 0.042
mean_var=57.5938+/-11.220, 0's: 0 Z-trim(108.5): 18 B-trim: 0 in 0/51
Lambda= 0.169000
statistics sampled from 10214 (10228) to 10214 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.314), width: 16
Scan time: 1.460
The best scores are: opt bits E(32554)
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 806 204.2 1.6e-53
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 711 181.0 1.6e-46
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 669 170.8 1.9e-43
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 658 168.1 1.2e-42
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 466 121.3 1.7e-28
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 332 88.6 9.7e-19
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 270 73.5 3.4e-14
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 240 66.2 5.5e-12
>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa)
initn: 806 init1: 806 opt: 806 Z-score: 1074.3 bits: 204.2 E(32554): 1.6e-53
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KE0 F
:
CCDS13 F
>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa)
initn: 711 init1: 711 opt: 711 Z-score: 948.9 bits: 181.0 E(32554): 1.6e-46
Smith-Waterman score: 711; 100.0% identity (100.0% similar) in 108 aa overlap (14-121:18-125)
10 20 30 40 50
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
:::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
70 80 90 100 110 120
120
pF1KE0 ETFGF
:::::
CCDS13 ETFGF
>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa)
initn: 669 init1: 669 opt: 669 Z-score: 893.5 bits: 170.8 E(32554): 1.9e-43
Smith-Waterman score: 669; 82.5% identity (95.0% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
:::.. :::::.: .: ..:. ::.:::.:::::::::::::::::::::::::::::::
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
:::.:::::::::: .:::::::: ::::::::::...::.:::::::::::::::::::
CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KE0 F
CCDS10 MKLSV
>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa)
initn: 658 init1: 658 opt: 658 Z-score: 879.0 bits: 168.1 E(32554): 1.2e-42
Smith-Waterman score: 658; 81.7% identity (94.2% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
:::.. :::::.: .: ..:. ::.:::.:::::::::::::::::::::::::::::::
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
:::.:::::::::: .:::::::: ::::::::::...::.::::::::::: :::::::
CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
70 80 90 100 110 120
pF1KE0 F
CCDS41 MKLSV
>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa)
initn: 466 init1: 466 opt: 466 Z-score: 624.9 bits: 121.3 E(32554): 1.7e-28
Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (1-120:7-126)
10 20 30 40 50
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV
.:: ::::::.:.: : .:: :: . :.::::..::: : :: ::::::::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA
:....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.::
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
120
pF1KE0 SQETFGF
::::::
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa)
initn: 328 init1: 127 opt: 332 Z-score: 449.9 bits: 88.6 E(32554): 9.7e-19
Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (7-121:5-117)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
::. .:. :: : .:: ..:...:::.:. .: .:. .:: :.:::. ...
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
.... :::.:.:: .:.::.:.. .. . : ....::.:::::::::..:....:::
CCDS10 AQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
60 70 80 90 100 110
pF1KE0 F
:
CCDS10 F
>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa)
initn: 260 init1: 123 opt: 270 Z-score: 368.2 bits: 73.5 E(32554): 3.4e-14
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (7-120:5-116)
10 20 30 40 50 60
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
.:. . : : :: ..:: ..:...:::.:. . ..: ::: :.:::. ...
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
... .::.:..: : .:.:..:: ... .:. ....::....:: :::..:... ..:
CCDS86 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
60 70 80 90 100 110
pF1KE0 F
CCDS86 K
>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa)
initn: 223 init1: 104 opt: 240 Z-score: 328.7 bits: 66.2 E(32554): 5.5e-12
Smith-Waterman score: 240; 31.4% identity (76.3% similar) in 118 aa overlap (4-121:8-117)
10 20 30 40 50
pF1KE0 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
..::..::: : ..:: ..:...:::.:. . .. ::: :.:::.
CCDS11 MKFVYKEEHPFEKRRS------EGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPS
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
...... .::.:..: .:.:..:: . . .:. ....:.....:: :::..:...
CCDS11 DLTVGQFYFLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDE
60 70 80 90 100 110
120
pF1KE0 ETFGF
..:.
CCDS11 SVYGL
121 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:58:26 2016 done: Fri Nov 4 01:58:26 2016
Total Scan time: 1.460 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]