FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0128, 101 aa
  1>>>pF1KE0128 101 - 101 aa - 101 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3601+/-0.000322; mu= 13.2012+/- 0.020
 mean_var=43.3948+/- 8.946, 0's: 0 Z-trim(113.6): 7  B-trim: 0 in 0/49
 Lambda= 0.194695
 statistics sampled from 23005 (23010) to 23005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.27), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(85289)
NP_001017980 (OMIM: 300913,310440) vacuolar ATPase ( 101)  650 189.3 9.3e-49
XP_011529427 (OMIM: 300913,310440) PREDICTED: vacu ( 156)  533 156.5 1.1e-38


>>NP_001017980 (OMIM: 300913,310440) vacuolar ATPase ass  (101 aa)
 initn: 650 init1: 650 opt: 650  Z-score: 996.3  bits: 189.3 E(85289): 9.3e-49
Smith-Waterman score: 650; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KE0 MERPDKAALNALQPPEFRNESSLASTLKTLLFFTALMITVPIGLYFTTKSYIFEGALGMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERPDKAALNALQPPEFRNESSLASTLKTLLFFTALMITVPIGLYFTTKSYIFEGALGMS
               10        20        30        40        50        60

               70        80        90       100 
pF1KE0 NRDSYFYAAIVAVVAVHVVLALFVYVAWNEGSRQWREGKQD
       :::::::::::::::::::::::::::::::::::::::::
NP_001 NRDSYFYAAIVAVVAVHVVLALFVYVAWNEGSRQWREGKQD
               70        80        90       100 

>>XP_011529427 (OMIM: 300913,310440) PREDICTED: vacuolar  (156 aa)
 initn: 533 init1: 533 opt: 533  Z-score: 815.9  bits: 156.5 E(85289): 1.1e-38
Smith-Waterman score: 533; 100.0% identity (100.0% similar) in 84 aa overlap (18-101:73-156)

                            10        20        30        40       
pF1KE0              MERPDKAALNALQPPEFRNESSLASTLKTLLFFTALMITVPIGLYFT
                                     ::::::::::::::::::::::::::::::
XP_011 RLNVEWLGYSPGLLLEHRPLLAGRTPRSHRRNESSLASTLKTLLFFTALMITVPIGLYFT
             50        60        70        80        90       100  

        50        60        70        80        90       100 
pF1KE0 TKSYIFEGALGMSNRDSYFYAAIVAVVAVHVVLALFVYVAWNEGSRQWREGKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKSYIFEGALGMSNRDSYFYAAIVAVVAVHVVLALFVYVAWNEGSRQWREGKQD
            110       120       130       140       150      




101 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:50:20 2016 done: Fri Nov  4 01:50:21 2016
 Total Scan time:  3.790 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]