FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0133, 261 aa
  1>>>pF1KE0133 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9467+/-0.000805; mu= 16.3925+/- 0.048
 mean_var=60.3509+/-12.623, 0's: 0 Z-trim(107.3): 18  B-trim: 0 in 0/49
 Lambda= 0.165094
 statistics sampled from 9508 (9513) to 9508 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS14739.1 TMEM187 gene_id:8269|Hs108|chrX        ( 261) 1847 448.1 2.8e-126


>>CCDS14739.1 TMEM187 gene_id:8269|Hs108|chrX             (261 aa)
 initn: 1847 init1: 1847 opt: 1847  Z-score: 2380.6  bits: 448.1 E(32554): 2.8e-126
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE0 MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAPVAGLPAFLAMPFNSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAPVAGLPAFLAMPFNSLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWLRLWTQWRRAAVLDQWLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWLRLWTQWRRAAVLDQWLTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHPQGFEVALGAHVVAAVGQALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHPQGFEVALGAHVVAAVGQALR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 THRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWRLFQCLTGHFWSKVCDVLQFHFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 THRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWRLFQCLTGHFWSKVCDVLQFHFA
              190       200       210       220       230       240

              250       260 
pF1KE0 FLFLTHFNTHPRFHPSGGKTR
       :::::::::::::::::::::
CCDS14 FLFLTHFNTHPRFHPSGGKTR
              250       260 




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:24:29 2016 done: Fri Nov  4 01:24:30 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]