FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0133, 261 aa
  1>>>pF1KE0133 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6238+/-0.000363; mu= 18.3378+/- 0.022
 mean_var=60.8909+/-12.991, 0's: 0 Z-trim(113.8): 16  B-trim: 1416 in 1/51
 Lambda= 0.164361
 statistics sampled from 23368 (23378) to 23368 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.274), width:  16
 Scan time:  6.560

The best scores are:                                      opt bits E(85289)
NP_003483 (OMIM: 300059) transmembrane protein 187 ( 261) 1847 446.3 2.6e-125
XP_011529501 (OMIM: 300059) PREDICTED: transmembra ( 261) 1847 446.3 2.6e-125


>>NP_003483 (OMIM: 300059) transmembrane protein 187 [Ho  (261 aa)
 initn: 1847 init1: 1847 opt: 1847  Z-score: 2370.6  bits: 446.3 E(85289): 2.6e-125
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE0 MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAPVAGLPAFLAMPFNSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAPVAGLPAFLAMPFNSLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWLRLWTQWRRAAVLDQWLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWLRLWTQWRRAAVLDQWLTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHPQGFEVALGAHVVAAVGQALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHPQGFEVALGAHVVAAVGQALR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 THRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWRLFQCLTGHFWSKVCDVLQFHFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 THRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWRLFQCLTGHFWSKVCDVLQFHFA
              190       200       210       220       230       240

              250       260 
pF1KE0 FLFLTHFNTHPRFHPSGGKTR
       :::::::::::::::::::::
NP_003 FLFLTHFNTHPRFHPSGGKTR
              250       260 

>>XP_011529501 (OMIM: 300059) PREDICTED: transmembrane p  (261 aa)
 initn: 1847 init1: 1847 opt: 1847  Z-score: 2370.6  bits: 446.3 E(85289): 2.6e-125
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE0 MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAPVAGLPAFLAMPFNSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAPVAGLPAFLAMPFNSLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWLRLWTQWRRAAVLDQWLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWLRLWTQWRRAAVLDQWLTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHPQGFEVALGAHVVAAVGQALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHPQGFEVALGAHVVAAVGQALR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 THRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWRLFQCLTGHFWSKVCDVLQFHFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWRLFQCLTGHFWSKVCDVLQFHFA
              190       200       210       220       230       240

              250       260 
pF1KE0 FLFLTHFNTHPRFHPSGGKTR
       :::::::::::::::::::::
XP_011 FLFLTHFNTHPRFHPSGGKTR
              250       260 




261 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:24:30 2016 done: Fri Nov  4 01:24:31 2016
 Total Scan time:  6.560 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]