FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0135, 339 aa
  1>>>pF1KE0135 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8156+/-0.00118; mu= -2.1507+/- 0.070
 mean_var=321.9173+/-66.020, 0's: 0 Z-trim(110.7): 21  B-trim: 110 in 1/52
 Lambda= 0.071483
 statistics sampled from 11824 (11830) to 11824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.363), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS14751.1 FAM50A gene_id:9130|Hs108|chrX         ( 339) 2198 240.1   2e-63
CCDS4487.1 FAM50B gene_id:26240|Hs108|chr6         ( 325) 1158 132.8 3.7e-31


>>CCDS14751.1 FAM50A gene_id:9130|Hs108|chrX              (339 aa)
 initn: 2198 init1: 2198 opt: 2198  Z-score: 1252.3  bits: 240.1 E(32554): 2e-63
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KE0 MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFLPDRDREEEENRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFLPDRDREEEENRLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDE
              250       260       270       280       290       300

              310       320       330         
pF1KE0 SHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR
       :::::::::::::::::::::::::::::::::::::::
CCDS14 SHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR
              310       320       330         

>>CCDS4487.1 FAM50B gene_id:26240|Hs108|chr6              (325 aa)
 initn: 1726 init1: 1142 opt: 1158  Z-score: 672.9  bits: 132.8 E(32554): 3.7e-31
Smith-Waterman score: 1700; 74.3% identity (90.3% similar) in 339 aa overlap (1-339:1-325)

               10        20        30        40        50        60
pF1KE0 MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAEL
       ::::::.  ::::::::.::::.:::::: .:::::::.:.::..::.::::::::::::
CCDS44 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL
       :::::::::::::::.:::::.:::.::::... .: ... :. ::.:...: ::::: :
CCDS44 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFLPDRDREEEENRLR
       ::.:.. .. ..  :              . .  .:::::::::::::::::::::::::
CCDS44 SFALDDLDDQADAAE--------------ARRAGNLGKNPDVDTSFLPDRDREEEENRLR
              130                     140       150       160      

              190       200       210       220       230       240
pF1KE0 EELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSE
       :::::::::..::.:.::.:.::::::::::::::..:::::.::::.:::. ::::: :
CCDS44 EELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLE
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KE0 LRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDE
       ::::::::::.::::::.::.:.:::::...:::::::::.::::::::::::::.::::
CCDS44 LRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDE
        230       240       250       260       270       280      

              310       320       330         
pF1KE0 SHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR
       ::::::::::::::::::::::::: :::::::::::::
CCDS44 SHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYTIR
        290       300       310       320     




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:09:56 2016 done: Fri Nov  4 01:09:56 2016
 Total Scan time:  2.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]