Result of FASTA (ccds) for pF1KE0143
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0143, 310 aa
  1>>>pF1KE0143 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6410+/-0.000765; mu= 14.7736+/- 0.046
 mean_var=82.7092+/-16.248, 0's: 0 Z-trim(109.9): 28  B-trim: 0 in 0/50
 Lambda= 0.141025
 statistics sampled from 11173 (11197) to 11173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.344), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS78409.1 AUH gene_id:549|Hs108|chr9             ( 310) 2003 416.9  1e-116
CCDS6689.1 AUH gene_id:549|Hs108|chr9              ( 339) 1084 229.9 2.1e-60
CCDS55600.1 ECHDC2 gene_id:55268|Hs108|chr1        ( 292)  753 162.5 3.5e-40
CCDS571.1 ECHDC2 gene_id:55268|Hs108|chr1          ( 261)  698 151.3 7.5e-37
CCDS72794.1 ECHDC2 gene_id:55268|Hs108|chr1        ( 244)  462 103.3   2e-22
CCDS7681.1 ECHS1 gene_id:1892|Hs108|chr10          ( 290)  365 83.6   2e-16


>>CCDS78409.1 AUH gene_id:549|Hs108|chr9                  (310 aa)
 initn: 2003 init1: 2003 opt: 2003  Z-score: 2208.9  bits: 416.9 E(32554): 1e-116
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE0 MAAAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAAAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DKKVRTIIIRSEVPGIFCAANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DKKVRTIIIRSEVPGIFCAANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFK
              250       260       270       280       290       300

              310
pF1KE0 EKRPPRYKGE
       ::::::::::
CCDS78 EKRPPRYKGE
              310

>>CCDS6689.1 AUH gene_id:549|Hs108|chr9                   (339 aa)
 initn: 1989 init1: 1084 opt: 1084  Z-score: 1197.9  bits: 229.9 E(32554): 2.1e-60
Smith-Waterman score: 1935; 91.4% identity (91.4% similar) in 339 aa overlap (1-310:1-339)

               10        20        30        40        50        60
pF1KE0 MAAAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAAAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKS
               70        80        90       100       110       120

              130                                    140       150 
pF1KE0 DKKVRTIIIRSEVPGIFCA-----------------------------ANLPVPTIAAID
       :::::::::::::::::::                             ::::::::::::
CCDS66 DKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAID
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KE0 GLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KE0 RVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVD
              250       260       270       280       290       300

             280       290       300       310
pF1KE0 LVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE
       :::::::::::::::::::::::::::::::::::::::
CCDS66 LVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE
              310       320       330         

>>CCDS55600.1 ECHDC2 gene_id:55268|Hs108|chr1             (292 aa)
 initn: 871 init1: 738 opt: 753  Z-score: 834.8  bits: 162.5 E(32554): 3.5e-40
Smith-Waterman score: 837; 47.9% identity (75.4% similar) in 280 aa overlap (61-310:13-292)

               40        50        60        70         80         
pF1KE0 CPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTE-DELRVRHLEEENRGI
                                     :   :: .:.  .  .:..:: :   ..::
CCDS55                   MLRVLCLLRPWRPLRARGCASDGAAGGSEIQVRALAGPDQGI
                                 10        20        30        40  

      90       100       110       120       130                   
pF1KE0 VVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCA----------
       . . .::  ..:.:.. ... : ...  :. :..::....:: : :.:::          
CCDS55 TEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQM
             50        60        70        80        90       100  

                        140       150       160       170       180
pF1KE0 -------------------ANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE
                          : .:.:::::.::.:::::::::::::.::::::: :::.:
CCDS55 SEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIE
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KE0 TKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYR
       :  ...::.:::::::: .:..:::::::..: :.: ::...::..:.. ::.::::::.
CCDS55 TTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQ
            170       180       190       200       210       220  

              250       260       270       280       290       300
pF1KE0 KALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFK
       .:  ::.:.:::.:.:.:..:.::..: :::...:.:::  ::::.:::.:::::. ::.
CCDS55 RARALAQEILPQAPIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFR
            230       240       250       260       270       280  

              310
pF1KE0 EKRPPRYKGE
       ::: :.. :.
CCDS55 EKRTPKFVGK
            290  

>>CCDS571.1 ECHDC2 gene_id:55268|Hs108|chr1               (261 aa)
 initn: 753 init1: 584 opt: 698  Z-score: 775.1  bits: 151.3 E(32554): 7.5e-37
Smith-Waterman score: 698; 45.2% identity (76.2% similar) in 252 aa overlap (61-310:13-261)

               40        50        60        70         80         
pF1KE0 CPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTE-DELRVRHLEEENRGI
                                     :   :: .:.  .  .:..:: :   ..::
CCDS57                   MLRVLCLLRPWRPLRARGCASDGAAGGSEIQVRALAGPDQGI
                                 10        20        30        40  

      90       100       110       120       130        140        
pF1KE0 VVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCA-ANLPVPTIA
       . . .::  ..:.:.. ... : ...  :. :..::....:: : :.::: :.:      
CCDS57 TEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQM
             50        60        70        80        90       100  

      150       160       170       180       190       200        
pF1KE0 AIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI
       .   ...      .:  ::   :::: :::.::  ...::.:::::::: .:..::::::
CCDS57 SEAEVGVFVQRLRGLMNDI---ASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELI
            110       120          130       140       150         

      210       220       230       240       250       260        
pF1KE0 FSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGM
       :..: :.: ::...::..:.. ::.::::::..:  ::.:.:::.:.:.:..:.::..: 
CCDS57 FTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQAPIAVRLGKVAIDRGT
     160       170       180       190       200       210         

      270       280       290       300       310
pF1KE0 EVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE
       :::...:.:::  ::::.:::.:::::. ::.::: :.. :.
CCDS57 EVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVGK
     220       230       240       250       260 

>>CCDS72794.1 ECHDC2 gene_id:55268|Hs108|chr1             (244 aa)
 initn: 644 init1: 335 opt: 462  Z-score: 516.0  bits: 103.3 E(32554): 2e-22
Smith-Waterman score: 593; 42.1% identity (69.8% similar) in 252 aa overlap (61-310:13-244)

               40        50        60        70         80         
pF1KE0 CPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTE-DELRVRHLEEENRGI
                                     :   :: .:.  .  .:..:: :   ..::
CCDS72                   MLRVLCLLRPWRPLRARGCASDGAAGGSEIQVRALAGPDQGI
                                 10        20        30        40  

      90       100       110       120       130        140        
pF1KE0 VVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCA-ANLPVPTIA
       . . .::  ..:.:.. ... : ...  :. :..::....:: : :.::: :.:      
CCDS72 TEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQM
             50        60        70        80        90       100  

      150       160       170       180       190       200        
pF1KE0 AIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI
       .   ...      .:  ::   :::: :::.::  ...::.:::::::: .:..::::::
CCDS72 SEAEVGVFVQRLRGLMNDI---ASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELI
            110       120          130       140       150         

      210       220       230       240       250       260        
pF1KE0 FSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGM
       :..: :.: ::...::..:.. ::.::::::..:  ::.:.:::                
CCDS72 FTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQ----------------
     160       170       180       190       200                   

      270       280       290       300       310
pF1KE0 EVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE
        ::...:.:::  ::::.:::.:::::. ::.::: :.. :.
CCDS72 -VDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVGK
            210       220       230       240    

>>CCDS7681.1 ECHS1 gene_id:1892|Hs108|chr10               (290 aa)
 initn: 305 init1: 254 opt: 365  Z-score: 408.3  bits: 83.6 E(32554): 2e-16
Smith-Waterman score: 365; 36.1% identity (70.5% similar) in 166 aa overlap (145-310:129-290)

          120       130       140       150       160       170    
pF1KE0 VDALKSDKKVRTIIIRSEVPGIFCAANLPVPTIAAIDGLALGGGLELALACDIRVAASSA
                                     :.:::..: :.::: :::. :::  :. .:
CCDS76 DIKEMQNLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKA
      100       110       120       130       140       150        

          180       190       200       210       220       230    
pF1KE0 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE
       ...  :  .. :::.:::::: ::.: ::: :.....  .....:: .::.:..      
CCDS76 QFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPV---
      160       170       180       190       200       210        

          240       250       260       270       280       290    
pF1KE0 GDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLE
        ..  ..:.. :...  .. ... .:: ..: ..:. :. :  .:.  . .:. : :: :
CCDS76 -ETLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKE
          220       230       240       250       260       270    

          300       310
pF1KE0 GLLAFKEKRPPRYKGE
       :. :: :::   .: .
CCDS76 GMTAFVEKRKANFKDQ
          280       290




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:29:34 2016 done: Fri Nov  4 00:29:35 2016
 Total Scan time:  2.800 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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