FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0145, 125 aa
  1>>>pF1KE0145 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2598+/-0.000646; mu= 10.2874+/- 0.039
 mean_var=55.5041+/-11.071, 0's: 0 Z-trim(109.8): 13  B-trim: 0 in 0/51
 Lambda= 0.172152
 statistics sampled from 11110 (11113) to 11110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS7009.1 PHPT1 gene_id:29085|Hs108|chr9          ( 125)  850 218.6 8.2e-58
CCDS48060.1 PHPT1 gene_id:29085|Hs108|chr9         ( 124)  642 166.9 2.9e-42


>>CCDS7009.1 PHPT1 gene_id:29085|Hs108|chr9               (125 aa)
 initn: 850 init1: 850 opt: 850  Z-score: 1151.4  bits: 218.6 E(32554): 8.2e-58
Smith-Waterman score: 850; 97.6% identity (98.4% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE0 MAVADLALIPDVDTDSDGVFKYVLIRIHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
       ::::::::::::: ::::::::::::.:::::::::::::::::::::::::::::::::
CCDS70 MAVADLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGDMQKQGCDCECLGGGRTSHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS70 SGDMQKQGCDCECLGGGRISHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
               70        80        90       100       110       120

            
pF1KE0 ANDGY
       :::::
CCDS70 ANDGY
            

>>CCDS48060.1 PHPT1 gene_id:29085|Hs108|chr9              (124 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 872.3  bits: 166.9 E(32554): 2.9e-42
Smith-Waterman score: 642; 96.8% identity (97.9% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE0 MAVADLALIPDVDTDSDGVFKYVLIRIHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
       ::::::::::::: ::::::::::::.:::::::::::::::::::::::::::::::::
CCDS48 MAVADLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGDMQKQGCDCECLGGGRTSHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
       :::::::::::::::::: ::::::::::::::::                         
CCDS48 SGDMQKQGCDCECLGGGRISHQSQDKKIHVYGYSMMRPTCVPLGASGPRIHHQGLWSCPA
               70        80        90       100       110       120

            
pF1KE0 ANDGY
            
CCDS48 RHFN 
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:26:36 2016 done: Fri Nov  4 00:26:36 2016
 Total Scan time:  1.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]