FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0145, 125 aa
  1>>>pF1KE0145 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0893+/-0.000303; mu= 11.2888+/- 0.019
 mean_var=56.7829+/-11.526, 0's: 0 Z-trim(116.7): 6  B-trim: 0 in 0/54
 Lambda= 0.170202
 statistics sampled from 28123 (28127) to 28123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.33), width:  16
 Scan time:  4.160

The best scores are:                                      opt bits E(85289)
NP_054891 (OMIM: 610167) 14 kDa phosphohistidine p ( 125)  850 216.3   1e-56
NP_001274271 (OMIM: 610167) 14 kDa phosphohistidin ( 127)  836 212.8 1.1e-55
NP_001274272 (OMIM: 610167) 14 kDa phosphohistidin ( 125)  648 166.7 8.9e-42
NP_001129333 (OMIM: 610167) 14 kDa phosphohistidin ( 124)  642 165.2 2.5e-41


>>NP_054891 (OMIM: 610167) 14 kDa phosphohistidine phosp  (125 aa)
 initn: 850 init1: 850 opt: 850  Z-score: 1139.1  bits: 216.3 E(85289): 1e-56
Smith-Waterman score: 850; 97.6% identity (98.4% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE0 MAVADLALIPDVDTDSDGVFKYVLIRIHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
       ::::::::::::: ::::::::::::.:::::::::::::::::::::::::::::::::
NP_054 MAVADLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGDMQKQGCDCECLGGGRTSHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_054 SGDMQKQGCDCECLGGGRISHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
               70        80        90       100       110       120

            
pF1KE0 ANDGY
       :::::
NP_054 ANDGY
            

>>NP_001274271 (OMIM: 610167) 14 kDa phosphohistidine ph  (127 aa)
 initn: 838 init1: 507 opt: 836  Z-score: 1120.4  bits: 212.8 E(85289): 1.1e-55
Smith-Waterman score: 836; 96.1% identity (96.9% similar) in 127 aa overlap (1-125:1-127)

               10        20        30        40        50          
pF1KE0 MAVADLALIPDVDTDSDGVFKYVLIRIHSAPRSGAPAAESKEIVRGYKWAEYH--ADIYD
       ::::::::::::: ::::::::::::.::::::::::::::::::::::::::  :::::
NP_001 MAVADLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHGEADIYD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE0 KVSGDMQKQGCDCECLGGGRTSHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEV
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 KVSGDMQKQGCDCECLGGGRISHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEV
               70        80        90       100       110       120

      120     
pF1KE0 TWANDGY
       :::::::
NP_001 TWANDGY
              

>>NP_001274272 (OMIM: 610167) 14 kDa phosphohistidine ph  (125 aa)
 initn: 648 init1: 648 opt: 648  Z-score: 871.0  bits: 166.7 E(85289): 8.9e-42
Smith-Waterman score: 648; 93.9% identity (96.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE0 MAVADLALIPDVDTDSDGVFKYVLIRIHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
       ::::::::::::: ::::::::::::.:::::::::::::::::::::::::::::::::
NP_001 MAVADLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGDMQKQGCDCECLGGGRTSHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
       :::::::::::::::::: :::::::::::::::: . :                     
NP_001 SGDMQKQGCDCECLGGGRISHQSQDKKIHVYGYSMQMRPTCVPLGASGPRIHHQGLWSCP
               70        80        90       100       110       120

            
pF1KE0 ANDGY
            
NP_001 ARHFN
            

>>NP_001129333 (OMIM: 610167) 14 kDa phosphohistidine ph  (124 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 863.1  bits: 165.2 E(85289): 2.5e-41
Smith-Waterman score: 642; 96.8% identity (97.9% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE0 MAVADLALIPDVDTDSDGVFKYVLIRIHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
       ::::::::::::: ::::::::::::.:::::::::::::::::::::::::::::::::
NP_001 MAVADLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGDMQKQGCDCECLGGGRTSHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTW
       :::::::::::::::::: ::::::::::::::::                         
NP_001 SGDMQKQGCDCECLGGGRISHQSQDKKIHVYGYSMMRPTCVPLGASGPRIHHQGLWSCPA
               70        80        90       100       110       120

            
pF1KE0 ANDGY
            
NP_001 RHFN 
            




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:26:37 2016 done: Fri Nov  4 00:26:37 2016
 Total Scan time:  4.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]