FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0147, 204 aa
  1>>>pF1KE0147 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9296+/-0.000548; mu= 16.5496+/- 0.033
 mean_var=67.7685+/-13.652, 0's: 0 Z-trim(114.3): 4  B-trim: 461 in 1/50
 Lambda= 0.155797
 statistics sampled from 14838 (14840) to 14838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.456), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS12996.1 NRSN2 gene_id:80023|Hs108|chr20        ( 204) 1434 330.0 6.1e-91
CCDS4549.1 NRSN1 gene_id:140767|Hs108|chr6         ( 195)  354 87.3   7e-18


>>CCDS12996.1 NRSN2 gene_id:80023|Hs108|chr20             (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1746.1  bits: 330.0 E(32554): 6.1e-91
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS12 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
CCDS12 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>CCDS4549.1 NRSN1 gene_id:140767|Hs108|chr6              (195 aa)
 initn: 331 init1: 223 opt: 354  Z-score: 434.5  bits: 87.3 E(32554): 7e-18
Smith-Waterman score: 364; 32.8% identity (67.2% similar) in 201 aa overlap (2-200:1-191)

               10        20          30        40        50        
pF1KE0 MMPSCNRSCSCSRGPSVEDGKW--YGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWP
        : ::.  :.  .. .. .: .  :::::::: :::::...    . .      : : : 
CCDS45  MSSCSNVCGSRQAQAAAEGGYQRYGVRSYLHQFYEDCTASIWEYEDDFQIQRSPNR-WS
                10        20        30        40        50         

       60        70        80        90       100       110        
pF1KE0 SLCWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLA
       :. ::..: :::....::...:..:. ::::.:..::..:.:.: .....:.::   .::
CCDS45 SVFWKVGLISGTVFVILGLTVLAVGFLVPPKIEAFGEADFVVVDTHAVQFNSALDMYKLA
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KE0 GTALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNAS
       :..:   .:. .: ::. ..  .... .: : .  .  .  : ..:  . . .:. . : 
CCDS45 GAVLFCIGGTSMAGCLLMSV--FVKSYSKEEKFLQQ--KFKERIAD-IKAHTQPVTK-AP
      120       130         140       150         160        170   

      180       190       200    
pF1KE0 GQSWFSPPASPFGQSSVQTIQPKRDS
       : .  . :..    : ::..::    
CCDS45 GPGETKIPVT---LSRVQNVQPLLAT
            180          190     




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:23:31 2016 done: Fri Nov  4 00:23:32 2016
 Total Scan time:  2.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]