Result of FASTA (omim) for
pF1KE0149
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0149, 156 aa
1>>>pF1KE0149 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0365+/-0.00029; mu= -6.8819+/- 0.018
mean_var=255.4200+/-51.130, 0's: 0 Z-trim(126.1): 7 B-trim: 0 in 0/62
Lambda= 0.080250
statistics sampled from 51342 (51349) to 51342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.602), width: 16
Scan time: 6.520
The best scores are: opt bits E(85289)
XP_006724557 (OMIM: 300533) PREDICTED: variable ch ( 166) 982 124.8 6.1e-29
NP_057463 (OMIM: 300533) variable charge X-linked ( 186) 982 124.8 6.7e-29
NP_001001888 (OMIM: 300981) variable charge X-link ( 246) 976 124.2 1.3e-28
XP_011543792 (OMIM: 300229) PREDICTED: variable ch ( 186) 970 123.4 1.7e-28
NP_038480 (OMIM: 300229) variable charge X-linked ( 206) 970 123.4 1.9e-28
NP_057462 (OMIM: 300532) variable charge X-linked ( 139) 817 105.6 3e-23
NP_004670 (OMIM: 400012,415000) testis-specific ba ( 125) 730 95.5 2.9e-20
>>XP_006724557 (OMIM: 300533) PREDICTED: variable charge (166 aa)
initn: 982 init1: 982 opt: 982 Z-score: 640.6 bits: 124.8 E(85289): 6.1e-29
Smith-Waterman score: 987; 94.0% identity (94.0% similar) in 166 aa overlap (1-156:1-166)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQES----------EMEELPSV
:::::::::::::::::::::::::::: ::::::::
XP_006 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEMEELPSV
130 140 150 160
>>NP_057463 (OMIM: 300533) variable charge X-linked prot (186 aa)
initn: 982 init1: 982 opt: 982 Z-score: 639.9 bits: 124.8 E(85289): 6.7e-29
Smith-Waterman score: 982; 98.7% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
NP_057 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEM
130 140 150 160 170 180
NP_057 EELPSV
>>NP_001001888 (OMIM: 300981) variable charge X-linked p (246 aa)
initn: 976 init1: 976 opt: 976 Z-score: 634.4 bits: 124.2 E(85289): 1.3e-28
Smith-Waterman score: 976; 98.0% identity (99.3% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPKPRASGPPAKAKEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
NP_001 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESEVEEPLSQESQV
130 140 150 160 170 180
NP_001 EEPLSQESEVEEPLSQESQVEEPLSQESEMEEPLSQESQVEEPLSQESEMEEPLSQESEM
190 200 210 220 230 240
>--
initn: 321 init1: 321 opt: 347 Z-score: 240.8 bits: 51.4 E(85289): 1.1e-06
Smith-Waterman score: 347; 71.4% identity (88.1% similar) in 84 aa overlap (76-156:163-246)
50 60 70 80 90 100
pF1KE0 RRGRRGKKGAATKMAAVTAPEAESGPAAPGPSDQPSQ-ELP-QHELPPEEPVSEGTQ-HD
: .: :. : : ..: :::.:. .. ..
NP_001 PLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESEVEEPLSQESQVEEPLSQESEVEE
140 150 160 170 180 190
110 120 130 140 150
pF1KE0 PLSQESELEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::..:::::::::.:::::::::::::::::::.::::::::::::::::
NP_001 PLSQESQVEEPLSQESEMEEPLSQESQVEEPLSQESEMEEPLSQESEMEELPSV
200 210 220 230 240
>>XP_011543792 (OMIM: 300229) PREDICTED: variable charge (186 aa)
initn: 970 init1: 970 opt: 970 Z-score: 632.4 bits: 123.4 E(85289): 1.7e-28
Smith-Waterman score: 970; 97.4% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::.:::::::::::::::::::::::::::::::::::::.::::::::::::
XP_011 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQEAELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
XP_011 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEM
130 140 150 160 170 180
XP_011 EELPSV
>>NP_038480 (OMIM: 300229) variable charge X-linked prot (206 aa)
initn: 970 init1: 970 opt: 970 Z-score: 631.7 bits: 123.4 E(85289): 1.9e-28
Smith-Waterman score: 970; 97.4% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::.:::::::::::::::::::::::::::::::::::::.::::::::::::
NP_038 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQEAELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
NP_038 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEM
130 140 150 160 170 180
NP_038 EEPLSQESQVEEPPSQESEMEELPSV
190 200
>--
initn: 303 init1: 303 opt: 303 Z-score: 214.4 bits: 46.2 E(85289): 3.3e-05
Smith-Waterman score: 303; 88.9% identity (98.1% similar) in 54 aa overlap (103-156:153-206)
80 90 100 110 120 130
pF1KE0 APGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEVEEPLSQESQVEE
:::::::.::::::::.:::::::::..::
NP_038 PLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEMEE
130 140 150 160 170 180
140 150
pF1KE0 PLSQESEVEEPLSQESEMEELPSV
::::::.:::: ::::::::::::
NP_038 PLSQESQVEEPPSQESEMEELPSV
190 200
>>NP_057462 (OMIM: 300532) variable charge X-linked prot (139 aa)
initn: 949 init1: 811 opt: 817 Z-score: 538.5 bits: 105.6 E(85289): 3e-23
Smith-Waterman score: 817; 89.2% identity (94.2% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::.:::::::::::::::::::::::::::::::::::::::.::::::::::
NP_057 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEVEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::. :.:. ..
NP_057 EEPLTVWMASFSPVSESTD
130
>>NP_004670 (OMIM: 400012,415000) testis-specific basic (125 aa)
initn: 846 init1: 727 opt: 730 Z-score: 484.7 bits: 95.5 E(85289): 2.9e-20
Smith-Waterman score: 730; 89.6% identity (94.4% similar) in 125 aa overlap (1-125:1-124)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
:::::::::::::: :.:::::::::::: :::::::::.::.::: :::::::::::::
NP_004 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::. ..
NP_004 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK-GRP
70 80 90 100 110
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
:::
NP_004 STPLSP
120
156 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:14:14 2016 done: Fri Nov 4 00:14:15 2016
Total Scan time: 6.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]