Result of FASTA (ccds) for
pF1KE0151
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0151, 119 aa
1>>>pF1KE0151 119 - 119 aa - 119 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5872+/-0.000499; mu= 14.6061+/- 0.030
mean_var=54.0586+/-10.978, 0's: 0 Z-trim(114.3): 7 B-trim: 189 in 1/50
Lambda= 0.174438
statistics sampled from 14869 (14876) to 14869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.457), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS8257.1 NDUFC2 gene_id:4718|Hs108|chr11 ( 119) 818 212.4 5.2e-56
CCDS55780.1 KCTD14 gene_id:100532726|Hs108|chr11 ( 114) 714 186.2 3.8e-48
CCDS73354.1 KCTD14 gene_id:100532726|Hs108|chr11 ( 134) 706 184.3 1.8e-47
CCDS55781.1 NDUFC2 gene_id:4718|Hs108|chr11 ( 88) 522 137.8 1.1e-33
CCDS55779.1 NDUFC2 gene_id:4718|Hs108|chr11 ( 96) 399 106.9 2.4e-24
CCDS73353.1 KCTD14 gene_id:100532726|Hs108|chr11 ( 86) 382 102.6 4.3e-23
>>CCDS8257.1 NDUFC2 gene_id:4718|Hs108|chr11 (119 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1119.0 bits: 212.4 E(32554): 5.2e-56
Smith-Waterman score: 818; 99.2% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS82 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
70 80 90 100 110
>>CCDS55780.1 KCTD14 gene_id:100532726|Hs108|chr11 (114 aa)
initn: 714 init1: 714 opt: 714 Z-score: 977.8 bits: 186.2 E(32554): 3.8e-48
Smith-Waterman score: 714; 99.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104)
10 20 30 40 50 60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS55 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDVYCCGAERRG
70 80 90 100 110
>>CCDS73354.1 KCTD14 gene_id:100532726|Hs108|chr11 (134 aa)
initn: 706 init1: 706 opt: 706 Z-score: 965.9 bits: 184.3 E(32554): 1.8e-47
Smith-Waterman score: 706; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS73 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
:::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEGGDIGLCCLSPGSLSDT
70 80 90 100 110 120
CCDS73 PAVFAVGSSAATTH
130
>>CCDS55781.1 NDUFC2 gene_id:4718|Hs108|chr11 (88 aa)
initn: 540 init1: 522 opt: 522 Z-score: 718.3 bits: 137.8 E(32554): 1.1e-33
Smith-Waterman score: 522; 96.2% identity (97.5% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS55 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
:::::::::::::::: : :
CCDS55 LLYITAFFFAGYYLVKLEAYANLYVDTL
70 80
>>CCDS55779.1 NDUFC2 gene_id:4718|Hs108|chr11 (96 aa)
initn: 396 init1: 374 opt: 399 Z-score: 550.4 bits: 106.9 E(32554): 2.4e-24
Smith-Waterman score: 610; 79.8% identity (80.7% similar) in 119 aa overlap (1-119:1-96)
10 20 30 40 50 60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
:::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS55 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATA-----
10 20 30 40 50
70 80 90 100 110
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
:::::::::::::::::::::::::::::::::::::::::
CCDS55 ------------------DYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
60 70 80 90
>>CCDS73353.1 KCTD14 gene_id:100532726|Hs108|chr11 (86 aa)
initn: 382 init1: 382 opt: 382 Z-score: 528.0 bits: 102.6 E(32554): 4.3e-23
Smith-Waterman score: 382; 98.2% identity (100.0% similar) in 56 aa overlap (1-56:1-56)
10 20 30 40 50 60
pF1KE0 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS73 MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGGDIG
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 LLYITAFFFAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR
CCDS73 LCCLSPGSLSDTPAVFAVGSSAATTH
70 80
119 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:08:31 2016 done: Fri Nov 4 00:08:31 2016
Total Scan time: 1.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]