FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0154, 298 aa
  1>>>pF1KE0154 298 - 298 aa - 298 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5255+/-0.000895; mu= 13.5362+/- 0.054
 mean_var=53.3529+/-10.841, 0's: 0 Z-trim(104.0): 19  B-trim: 0 in 0/47
 Lambda= 0.175588
 statistics sampled from 7674 (7675) to 7674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.236), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS4341.1 THG1L gene_id:54974|Hs108|chr5          ( 298) 2041 525.0 2.7e-149


>>CCDS4341.1 THG1L gene_id:54974|Hs108|chr5               (298 aa)
 initn: 2041 init1: 2041 opt: 2041  Z-score: 2793.9  bits: 525.0 E(32554): 2.7e-149
Smith-Waterman score: 2041; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE0 MWGACKVKVHDSLATISITLRRYLRLGATMAKSKFEYVRDFEADDTCLAHCWVVVRLDGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MWGACKVKVHDSLATISITLRRYLRLGATMAKSKFEYVRDFEADDTCLAHCWVVVRLDGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NFHRFAEKHNFAKPNDSRALQLMTKCAQTVMEELEDIVIAYGQSDEYSFVFKRKTNWFKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NFHRFAEKHNFAKPNDSRALQLMTKCAQTVMEELEDIVIAYGQSDEYSFVFKRKTNWFKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RASKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQADC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RASKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQADC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 HINNLYNTVFWALIQQSGLTPVQAQGRLQGTLAADKNEILFSEFNINYNNELPMYRKGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HINNLYNTVFWALIQQSGLTPVQAQGRLQGTLAADKNEILFSEFNINYNNELPMYRKGTV
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE0 LIWQKVDEVMTKEIKLPTEMEGKKMAVTRTRTKPVPLHCDIIGDAFWKEHPEILDEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LIWQKVDEVMTKEIKLPTEMEGKKMAVTRTRTKPVPLHCDIIGDAFWKEHPEILDEDS
              250       260       270       280       290        




298 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:48:16 2016 done: Thu Nov  3 23:48:17 2016
 Total Scan time:  2.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]