FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0158, 292 aa
  1>>>pF1KE0158 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1972+/-0.00075; mu= 11.5826+/- 0.045
 mean_var=91.9710+/-18.294, 0's: 0 Z-trim(110.8): 7  B-trim: 132 in 1/52
 Lambda= 0.133736
 statistics sampled from 11841 (11846) to 11841 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.364), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS41284.1 MTFR1L gene_id:56181|Hs108|chr1        ( 292) 1901 376.4 1.3e-104
CCDS44089.1 MTFR1L gene_id:56181|Hs108|chr1        ( 205)  975 197.7 6.1e-51
CCDS5176.1 MTFR2 gene_id:113115|Hs108|chr6         ( 385)  296 66.8 2.8e-11


>>CCDS41284.1 MTFR1L gene_id:56181|Hs108|chr1             (292 aa)
 initn: 1901 init1: 1901 opt: 1901  Z-score: 1991.4  bits: 376.4 E(32554): 1.3e-104
Smith-Waterman score: 1901; 99.0% identity (99.7% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KE0 MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TLADIAWIAADEEETYARVRSDTRPLWHTWKPSPLIVMQRNASVPNLRGSEERLLALKKP
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS41 TLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALPALSRTTELQDELGHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHS
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAACSSSEEDDCVSLSKASSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAACSSSEEDDCVSLSKASSFA
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KE0 DMMGILKDFHRMKQSQDLNRSLLKEEDPAVLITEVLRRKFALKEEDISRKGN
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS41 DMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN
              250       260       270       280       290  

>>CCDS44089.1 MTFR1L gene_id:56181|Hs108|chr1             (205 aa)
 initn: 1016 init1: 975 opt: 975  Z-score: 1028.1  bits: 197.7 E(32554): 6.1e-51
Smith-Waterman score: 985; 75.0% identity (82.4% similar) in 216 aa overlap (1-216:1-200)

               10        20        30        40        50        60
pF1KE0 MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TLADIAWIAADEEETYARVRSDTRPLWHTWKPSPLIVMQRNASVPNLRGSEERLLALKKP
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS44 TLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALPALSRTTELQDELGHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHS
       :::::::::::::::.::::::::::::::..        ::  .   :       :::.
CCDS44 ALPALSRTTELQDELSHLRSQIAKIVAADAVT--------SPRRQRWRS------LSFHQ
              130       140       150               160            

              190       200       210       220       230       240
pF1KE0 TTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAACSSSEEDDCVSLSKASSFA
       .  ::.  ..  ..    .::.: :   ..  : .:                        
CCDS44 SPCFVLPALNVANQNT--KLPAVRLKRMTASLCPRPAALQT                   
        170       180         190       200                        

              250       260       270       280       290  
pF1KE0 DMMGILKDFHRMKQSQDLNRSLLKEEDPAVLITEVLRRKFALKEEDISRKGN

>>CCDS5176.1 MTFR2 gene_id:113115|Hs108|chr6              (385 aa)
 initn: 286 init1: 153 opt: 296  Z-score: 316.0  bits: 66.8 E(32554): 2.8e-11
Smith-Waterman score: 340; 28.9% identity (53.6% similar) in 332 aa overlap (3-292:16-333)

                            10        20        30        40       
pF1KE0              MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPN
                      :. .  .. ::.:: .:..::.:: ::  :::.:: : .:: .: 
CCDS51 MSLILNILREMLEYFGVPVEQVLLIWENKDYGSTRSIVRIIGKMLPLEPCRRPNFELIPL
               10        20        30        40        50        60

            50        60        70        80        90             
pF1KE0 I----SDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLWHTWKPS-----PLIVM
       .    :: :      ::..::: ..: ::: .: : :..   .:.. . .     :: ..
CCDS51 LNSVDSDNCG---SMVPSFADILYVANDEEASYLRFRNS---IWKNEEEKVEIFHPLRLV
               70           80        90          100       110    

      100       110       120           130       140       150    
pF1KE0 QRNASVPNLRGSEERLLALKKPALP----ALSRTTELQDELGHLRSQIAKIVAADAASAS
        :.   : .: .:       :  ::    :. . . :..::  :::::: ::  .  . :
CCDS51 -RDPLSPAVRQKETV-----KNDLPVNEAAIRKIAALENELTFLRSQIAAIVEMQELKNS
           120            130       140       150       160        

          160       170       180       190       200       210    
pF1KE0 LTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECC
        . .  : : :.    :  ..::  .  :   ...   .    :  :  : . : .: : 
CCDS51 TNSS--SFGLSDERISLGQLSSSRAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF
      170         180       190       200       210       220      

          220       230        240                         250     
pF1KE0 KPEHKAACSSSEEDDCVS-LSKASSFAD------------------MMGILKDFHRMK--
        : . .. .  . :. .. .:: .  :.                  :. .:::....:  
CCDS51 PPVQPGSNNICDSDNPATEMSKQNPAANKTNYSHHSKSQRNKDIPNMLDVLKDMNKVKLR
        230       240       250       260       270       280      

             260             270       280       290               
pF1KE0 --QSQDLNRSLLKEE------DPAVLITEVLRRKFALKEEDISRKGN             
         . .  .: . :..      ::. ::...:..:::..:.:  .: :             
CCDS51 AIERSPGGRPIHKRKRQNSHWDPVSLISHALKQKFAFQEDDSFEKENRSWESSPFSSPET
        290       300       310       320       330       340      

CCDS51 SRFGHHISQSEGQRTKEEMVNTKAVDQGISNTSLLNSRI
        350       360       370       380     




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:30:25 2016 done: Thu Nov  3 23:30:25 2016
 Total Scan time:  2.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]