FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0159, 244 aa
  1>>>pF1KE0159 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4709+/-0.000754; mu= 13.4127+/- 0.045
 mean_var=66.6553+/-13.664, 0's: 0 Z-trim(108.4): 16  B-trim: 0 in 0/51
 Lambda= 0.157093
 statistics sampled from 10176 (10184) to 10176 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.313), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS3421.1 QDPR gene_id:5860|Hs108|chr4            ( 244) 1609 373.2 8.9e-104
CCDS77904.1 QDPR gene_id:5860|Hs108|chr4           ( 213) 1187 277.5 4.9e-75


>>CCDS3421.1 QDPR gene_id:5860|Hs108|chr4                 (244 aa)
 initn: 1609 init1: 1609 opt: 1609  Z-score: 1976.6  bits: 373.2 E(32554): 8.9e-104
Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE0 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
              190       200       210       220       230       240

           
pF1KE0 PAYF
       ::::
CCDS34 PAYF
           

>>CCDS77904.1 QDPR gene_id:5860|Hs108|chr4                (213 aa)
 initn: 1187 init1: 1187 opt: 1187  Z-score: 1460.6  bits: 277.5 E(32554): 4.9e-75
Smith-Waterman score: 1347; 87.3% identity (87.3% similar) in 244 aa overlap (1-244:1-213)

               10        20        30        40        50        60
pF1KE0 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSF
       :::::::::::::::::::::::::::::::::::                         
CCDS77 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNW-------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE0 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ------VTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
                40        50        60        70        80         

              130       140       150       160       170       180
pF1KE0 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
      90       100       110       120       130       140         

              190       200       210       220       230       240
pF1KE0 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
     150       160       170       180       190       200         

           
pF1KE0 PAYF
       ::::
CCDS77 PAYF
     210   




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:27:27 2016 done: Thu Nov  3 23:27:28 2016
 Total Scan time:  2.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]