Result of FASTA (ccds) for
pF1KE0166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0166, 248 aa
1>>>pF1KE0166 248 - 248 aa - 248 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6688+/-0.000763; mu= -0.4050+/- 0.046
mean_var=149.0889+/-29.686, 0's: 0 Z-trim(114.3): 10 B-trim: 0 in 0/55
Lambda= 0.105039
statistics sampled from 14900 (14910) to 14900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.458), width: 16
Scan time: 2.740
The best scores are: opt bits E(32554)
CCDS14643.1 FAM122B gene_id:159090|Hs108|chrX ( 248) 1634 258.3 3.5e-69
CCDS55497.1 FAM122B gene_id:159090|Hs108|chrX ( 247) 1617 255.7 2.1e-68
CCDS55499.1 FAM122B gene_id:159090|Hs108|chrX ( 266) 1240 198.6 3.5e-51
CCDS55498.1 FAM122B gene_id:159090|Hs108|chrX ( 241) 927 151.2 6.1e-37
>>CCDS14643.1 FAM122B gene_id:159090|Hs108|chrX (248 aa)
initn: 1634 init1: 1634 opt: 1634 Z-score: 1355.5 bits: 258.3 E(32554): 3.5e-69
Smith-Waterman score: 1634; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KE0 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI
190 200 210 220 230 240
pF1KE0 LMDDLSPK
::::::::
CCDS14 LMDDLSPK
>>CCDS55497.1 FAM122B gene_id:159090|Hs108|chrX (247 aa)
initn: 975 init1: 975 opt: 1617 Z-score: 1341.6 bits: 255.7 E(32554): 2.1e-68
Smith-Waterman score: 1617; 99.6% identity (99.6% similar) in 248 aa overlap (1-248:1-247)
10 20 30 40 50 60
pF1KE0 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS55 TRGFGKMFVSSSGLPPSPVPSPRRFS-RRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL
130 140 150 160 170
190 200 210 220 230 240
pF1KE0 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI
180 190 200 210 220 230
pF1KE0 LMDDLSPK
::::::::
CCDS55 LMDDLSPK
240
>>CCDS55499.1 FAM122B gene_id:159090|Hs108|chrX (266 aa)
initn: 1061 init1: 666 opt: 1240 Z-score: 1032.3 bits: 198.6 E(32554): 3.5e-51
Smith-Waterman score: 1569; 92.5% identity (92.5% similar) in 267 aa overlap (1-248:1-266)
10 20 30 40 50
pF1KE0 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSL-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLL
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 ------------------EEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPE
::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSSSPNRIPSSRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 KLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSV
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS55 KLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFS-RRSQSPVKCIRPSV
130 140 150 160 170
170 180 190 200 210 220
pF1KE0 LGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAK
180 190 200 210 220 230
230 240
pF1KE0 GSATAESPVACSNSCSSFILMDDLSPK
:::::::::::::::::::::::::::
CCDS55 GSATAESPVACSNSCSSFILMDDLSPK
240 250 260
>>CCDS55498.1 FAM122B gene_id:159090|Hs108|chrX (241 aa)
initn: 1017 init1: 598 opt: 927 Z-score: 776.7 bits: 151.2 E(32554): 6.1e-37
Smith-Waterman score: 1256; 90.9% identity (90.9% similar) in 219 aa overlap (1-200:1-218)
10 20 30 40 50
pF1KE0 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSL-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLL
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 ------------------EEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPE
::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSSSPNRIPSSRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 KLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSV
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS55 KLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFS-RRSQSPVKCIRPSV
130 140 150 160 170
170 180 190 200 210 220
pF1KE0 LGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAK
:::::::::::::::::::::::::::::::::::::::
CCDS55 LGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSWWCYQGEEIPALTRCVEHLQM
180 190 200 210 220 230
230 240
pF1KE0 GSATAESPVACSNSCSSFILMDDLSPK
CCDS55 NE
240
248 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:09:46 2016 done: Thu Nov 3 23:09:46 2016
Total Scan time: 2.740 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]