FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0168, 133 aa
  1>>>pF1KE0168 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6841+/-0.000721; mu= 15.1307+/- 0.044
 mean_var=71.3810+/-14.071, 0's: 0 Z-trim(110.2): 21  B-trim: 282 in 1/50
 Lambda= 0.151804
 statistics sampled from 11426 (11438) to 11426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.700

The best scores are:                                      opt bits E(32554)
CCDS14262.1 NDP gene_id:4693|Hs108|chrX            ( 133)  924 210.5 2.5e-55


>>CCDS14262.1 NDP gene_id:4693|Hs108|chrX                 (133 aa)
 initn: 924 init1: 924 opt: 924  Z-score: 1106.8  bits: 210.5 E(32554): 2.5e-55
Smith-Waterman score: 924; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE0 MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATY
               70        80        90       100       110       120

              130   
pF1KE0 RYILSCHCEECNS
       :::::::::::::
CCDS14 RYILSCHCEECNS
              130   




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:02:17 2016 done: Thu Nov  3 23:02:18 2016
 Total Scan time:  1.700 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]