FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0168, 133 aa
  1>>>pF1KE0168 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8421+/-0.000316; mu= 14.2309+/- 0.020
 mean_var=70.1214+/-13.894, 0's: 0 Z-trim(116.8): 34  B-trim: 112 in 1/51
 Lambda= 0.153161
 statistics sampled from 28144 (28171) to 28144 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.33), width:  16
 Scan time:  4.570

The best scores are:                                      opt bits E(85289)
NP_000257 (OMIM: 300658,305390,310600) norrin prec ( 133)  924 212.3 1.8e-55
NP_002448 (OMIM: 158370) mucin-2 precursor [Homo s (5289)  158 44.4  0.0025


>>NP_000257 (OMIM: 300658,305390,310600) norrin precurso  (133 aa)
 initn: 924 init1: 924 opt: 924  Z-score: 1116.8  bits: 212.3 E(85289): 1.8e-55
Smith-Waterman score: 924; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE0 MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATY
               70        80        90       100       110       120

              130   
pF1KE0 RYILSCHCEECNS
       :::::::::::::
NP_000 RYILSCHCEECNS
              130   

>>NP_002448 (OMIM: 158370) mucin-2 precursor [Homo sapie  (5289 aa)
 initn: 189 init1: 126 opt: 158  Z-score: 180.8  bits: 44.4 E(85289): 0.0025
Smith-Waterman score: 158; 32.1% identity (56.4% similar) in 78 aa overlap (53-130:5196-5266)

             30        40        50        60        70        80  
pF1KE0 DSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVSFS
                                     :   .: ::. .: : :.       .: .:
NP_002 FMPNGCCKTCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNHCSGSCGT------FVMYS
        5170      5180      5190      5200      5210               

             90       100       110       120       130            
pF1KE0 TVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECNS         
       .   : .  :: ::. . .. . . : : .:  :: :: .: ::.:..            
NP_002 AK-AQALDHSCSCCKEEKTSQREVVLSCPNGGSLTHTYTHIESCQCQDTVCGLPTGTSRR
    5220       5230      5240      5250      5260      5270        

NP_002 ARRSPRHLGSG
     5280         




133 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:02:18 2016 done: Thu Nov  3 23:02:19 2016
 Total Scan time:  4.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]