Result of FASTA (omim) for
pF1KE0171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0171, 222 aa
1>>>pF1KE0171 222 - 222 aa - 222 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2354+/-0.000333; mu= 13.8991+/- 0.021
mean_var=61.6050+/-12.265, 0's: 0 Z-trim(115.0): 16 B-trim: 55 in 1/50
Lambda= 0.163405
statistics sampled from 25155 (25167) to 25155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.295), width: 16
Scan time: 5.500
The best scores are: opt bits E(85289)
NP_000627 (OMIM: 147460,612634) superoxide dismuta ( 222) 1536 370.3 1.4e-102
NP_001019636 (OMIM: 147460,612634) superoxide dism ( 222) 1536 370.3 1.4e-102
NP_001309746 (OMIM: 147460,612634) superoxide dism ( 176) 1223 296.5 1.8e-80
NP_001309749 (OMIM: 147460,612634) superoxide dism ( 176) 1223 296.5 1.8e-80
NP_001309748 (OMIM: 147460,612634) superoxide dism ( 176) 1223 296.5 1.8e-80
NP_001309744 (OMIM: 147460,612634) superoxide dism ( 162) 785 193.2 2.1e-49
NP_001019637 (OMIM: 147460,612634) superoxide dism ( 183) 765 188.5 6.1e-48
NP_001309743 (OMIM: 147460,612634) superoxide dism ( 183) 765 188.5 6.1e-48
NP_001309745 (OMIM: 147460,612634) superoxide dism ( 140) 513 129.1 3.7e-30
>>NP_000627 (OMIM: 147460,612634) superoxide dismutase [ (222 aa)
initn: 1536 init1: 1536 opt: 1536 Z-score: 1962.7 bits: 370.3 E(85289): 1.4e-102
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
130 140 150 160 170 180
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
NP_000 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
190 200 210 220
>>NP_001019636 (OMIM: 147460,612634) superoxide dismutas (222 aa)
initn: 1536 init1: 1536 opt: 1536 Z-score: 1962.7 bits: 370.3 E(85289): 1.4e-102
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
130 140 150 160 170 180
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
190 200 210 220
>>NP_001309746 (OMIM: 147460,612634) superoxide dismutas (176 aa)
initn: 1223 init1: 1223 opt: 1223 Z-score: 1565.5 bits: 296.5 E(85289): 1.8e-80
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)
20 30 40 50 60 70
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
::::::::::::::::::::::::::::::
NP_001 MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
10 20 30
80 90 100 110 120 130
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
100 110 120 130 140 150
200 210 220
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::
NP_001 RPDYLKAIWNVINWENVTERYMACKK
160 170
>>NP_001309749 (OMIM: 147460,612634) superoxide dismutas (176 aa)
initn: 1223 init1: 1223 opt: 1223 Z-score: 1565.5 bits: 296.5 E(85289): 1.8e-80
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)
20 30 40 50 60 70
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
::::::::::::::::::::::::::::::
NP_001 MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
10 20 30
80 90 100 110 120 130
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
100 110 120 130 140 150
200 210 220
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::
NP_001 RPDYLKAIWNVINWENVTERYMACKK
160 170
>>NP_001309748 (OMIM: 147460,612634) superoxide dismutas (176 aa)
initn: 1223 init1: 1223 opt: 1223 Z-score: 1565.5 bits: 296.5 E(85289): 1.8e-80
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)
20 30 40 50 60 70
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
::::::::::::::::::::::::::::::
NP_001 MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
10 20 30
80 90 100 110 120 130
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
100 110 120 130 140 150
200 210 220
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::
NP_001 RPDYLKAIWNVINWENVTERYMACKK
160 170
>>NP_001309744 (OMIM: 147460,612634) superoxide dismutas (162 aa)
initn: 785 init1: 785 opt: 785 Z-score: 1008.0 bits: 193.2 E(85289): 2.1e-49
Smith-Waterman score: 990; 73.0% identity (73.0% similar) in 222 aa overlap (1-222:1-162)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKG-----
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
:::::
NP_001 -------------------------------------------------------LIPLL
120
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
130 140 150 160
>>NP_001019637 (OMIM: 147460,612634) superoxide dismutas (183 aa)
initn: 765 init1: 765 opt: 765 Z-score: 981.7 bits: 188.5 E(85289): 6.1e-48
Smith-Waterman score: 1173; 82.4% identity (82.4% similar) in 222 aa overlap (1-222:1-183)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::: :::::
NP_001 NLNVTEEKYQEALAKG---------------------------------------ELLEA
70 80
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
90 100 110 120 130 140
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
150 160 170 180
>>NP_001309743 (OMIM: 147460,612634) superoxide dismutas (183 aa)
initn: 765 init1: 765 opt: 765 Z-score: 981.7 bits: 188.5 E(85289): 6.1e-48
Smith-Waterman score: 1173; 82.4% identity (82.4% similar) in 222 aa overlap (1-222:1-183)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::: :::::
NP_001 NLNVTEEKYQEALAKG---------------------------------------ELLEA
70 80
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
90 100 110 120 130 140
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
150 160 170 180
>>NP_001309745 (OMIM: 147460,612634) superoxide dismutas (140 aa)
initn: 513 init1: 513 opt: 513 Z-score: 662.4 bits: 129.1 E(85289): 3.7e-30
Smith-Waterman score: 513; 95.1% identity (96.3% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::: :.
NP_001 NLNVTEEKYQEALAKGRFQAERREAVPGRGDPREPGPIRTGLSVEENSLRICTGSEFSRH
70 80 90 100 110 120
222 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:00:00 2016 done: Thu Nov 3 23:00:02 2016
Total Scan time: 5.500 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]