FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0177, 244 aa
  1>>>pF1KE0177 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1503+/-0.000832; mu= 15.2242+/- 0.050
 mean_var=63.3087+/-12.790, 0's: 0 Z-trim(106.8): 31  B-trim: 2 in 1/51
 Lambda= 0.161192
 statistics sampled from 9184 (9211) to 9184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS5618.1 CLDN12 gene_id:9069|Hs108|chr7          ( 244) 1657 393.7 5.8e-110


>>CCDS5618.1 CLDN12 gene_id:9069|Hs108|chr7               (244 aa)
 initn: 1657 init1: 1657 opt: 1657  Z-score: 2087.7  bits: 393.7 E(32554): 5.8e-110
Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE0 MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTVYTGLWVKCAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTVYTGLWVKCAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YDGSSDCLMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGALLLCLIGMCNTAFRSSVPNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YDGSSDCLMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGALLLCLIGMCNTAFRSSVPNI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWVIFYNIHLNKKFEPVFSFDYAVYVTIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWVIFYNIHLNKKFEPVFSFDYAVYVTIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SAGGLFMTSLILFIWYCTCKSLPSPFWQPLYSHPPSMHTYSQPYSARSRLSAIEIDIPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SAGGLFMTSLILFIWYCTCKSLPSPFWQPLYSHPPSMHTYSQPYSARSRLSAIEIDIPVV
              190       200       210       220       230       240

           
pF1KE0 SHTT
       ::::
CCDS56 SHTT
           




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:36:15 2016 done: Thu Nov  3 22:36:16 2016
 Total Scan time:  2.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]