FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0179, 342 aa
  1>>>pF1KE0179 342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2814+/-0.00069; mu= 13.2072+/- 0.042
 mean_var=95.7183+/-19.078, 0's: 0 Z-trim(113.3): 5  B-trim: 137 in 1/51
 Lambda= 0.131092
 statistics sampled from 13968 (13970) to 13968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.429), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS6808.1 TMEM268 gene_id:203197|Hs108|chr9       ( 342) 2317 447.7 6.6e-126
CCDS83405.1 TMEM268 gene_id:203197|Hs108|chr9      ( 343) 2305 445.4 3.2e-125


>>CCDS6808.1 TMEM268 gene_id:203197|Hs108|chr9            (342 aa)
 initn: 2317 init1: 2317 opt: 2317  Z-score: 2373.9  bits: 447.7 E(32554): 6.6e-126
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KE0 MACEPQVDPGATGPLPPSSPGWSALPGGSPPGWGQELHNGQVLTVLRIDNTCAPISFDLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MACEPQVDPGATGPLPPSSPGWSALPGGSPPGWGQELHNGQVLTVLRIDNTCAPISFDLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AAEEQLQTWGIQVPADQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVVVWANIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AAEEQLQTWGIQVPADQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVVVWANIYS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TSQMFALGNHWAGMLLVTLAAVSLTLTLVLVFERHQKKANTNTDLRLAAANGALLRHRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TSQMFALGNHWAGMLLVTLAAVSLTLTLVLVFERHQKKANTNTDLRLAAANGALLRHRVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LGVTDTVEGCQSVIQLWFVYFDLENCVQFLSDHVQEMKTSQESLLRSRLSQLCVVMETGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LGVTDTVEGCQSVIQLWFVYFDLENCVQFLSDHVQEMKTSQESLLRSRLSQLCVVMETGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SPATAEGPENLEDAPLLPGNSCPNERPLMQTELHQLVPEAEPEEMARQLLAVFGGYYIRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SPATAEGPENLEDAPLLPGNSCPNERPLMQTELHQLVPEAEPEEMARQLLAVFGGYYIRL
              250       260       270       280       290       300

              310       320       330       340  
pF1KE0 LVTSQLPQAMGTRHTNSPRIPCPCQLIEAYILGTGCCPFLAR
       ::::::::::::::::::::::::::::::::::::::::::
CCDS68 LVTSQLPQAMGTRHTNSPRIPCPCQLIEAYILGTGCCPFLAR
              310       320       330       340  

>>CCDS83405.1 TMEM268 gene_id:203197|Hs108|chr9           (343 aa)
 initn: 1797 init1: 1797 opt: 2305  Z-score: 2361.6  bits: 445.4 E(32554): 3.2e-125
Smith-Waterman score: 2305; 99.7% identity (99.7% similar) in 343 aa overlap (1-342:1-343)

               10        20        30        40        50        60
pF1KE0 MACEPQVDPGATGPLPPSSPGWSALPGGSPPGWGQELHNGQVLTVLRIDNTCAPISFDLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MACEPQVDPGATGPLPPSSPGWSALPGGSPPGWGQELHNGQVLTVLRIDNTCAPISFDLG
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KE0 AAEEQLQTWGIQ-VPADQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVVVWANIY
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AAEEQLQTWGIQQVPADQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVVVWANIY
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 STSQMFALGNHWAGMLLVTLAAVSLTLTLVLVFERHQKKANTNTDLRLAAANGALLRHRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 STSQMFALGNHWAGMLLVTLAAVSLTLTLVLVFERHQKKANTNTDLRLAAANGALLRHRV
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 LLGVTDTVEGCQSVIQLWFVYFDLENCVQFLSDHVQEMKTSQESLLRSRLSQLCVVMETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LLGVTDTVEGCQSVIQLWFVYFDLENCVQFLSDHVQEMKTSQESLLRSRLSQLCVVMETG
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE0 VSPATAEGPENLEDAPLLPGNSCPNERPLMQTELHQLVPEAEPEEMARQLLAVFGGYYIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VSPATAEGPENLEDAPLLPGNSCPNERPLMQTELHQLVPEAEPEEMARQLLAVFGGYYIR
              250       260       270       280       290       300

     300       310       320       330       340  
pF1KE0 LLVTSQLPQAMGTRHTNSPRIPCPCQLIEAYILGTGCCPFLAR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS83 LLVTSQLPQAMGTRHTNSPRIPCPCQLIEAYILGTGCCPFLAR
              310       320       330       340   




342 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:30:41 2016 done: Thu Nov  3 22:30:41 2016
 Total Scan time:  3.070 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]