FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0181, 269 aa 1>>>pF1KE0181 269 - 269 aa - 269 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0857+/-0.000986; mu= 15.6447+/- 0.058 mean_var=57.5550+/-11.863, 0's: 0 Z-trim(103.2): 28 B-trim: 0 in 0/46 Lambda= 0.169057 statistics sampled from 7288 (7294) to 7288 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.224), width: 16 Scan time: 2.210 The best scores are: opt bits E(32554) CCDS6968.1 SURF4 gene_id:6836|Hs108|chr9 ( 269) 1787 444.2 4.4e-125 CCDS75929.1 SURF4 gene_id:6836|Hs108|chr9 ( 226) 1500 374.2 4.5e-104 CCDS65178.1 SURF4 gene_id:6836|Hs108|chr9 ( 159) 1052 264.9 2.6e-71 CCDS65177.1 SURF4 gene_id:6836|Hs108|chr9 ( 128) 816 207.2 4.6e-54 >>CCDS6968.1 SURF4 gene_id:6836|Hs108|chr9 (269 aa) initn: 1787 init1: 1787 opt: 1787 Z-score: 2359.0 bits: 444.2 E(32554): 4.4e-125 Smith-Waterman score: 1787; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269) 10 20 30 40 50 60 pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 190 200 210 220 230 240 250 260 pF1KE0 QTMSVIGGLLLVVALGPGGVSMDEKKKEW ::::::::::::::::::::::::::::: CCDS69 QTMSVIGGLLLVVALGPGGVSMDEKKKEW 250 260 >>CCDS75929.1 SURF4 gene_id:6836|Hs108|chr9 (226 aa) initn: 1500 init1: 1500 opt: 1500 Z-score: 1981.9 bits: 374.2 E(32554): 4.5e-104 Smith-Waterman score: 1500; 100.0% identity (100.0% similar) in 226 aa overlap (44-269:1-226) 20 30 40 50 60 70 pF1KE0 ADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLN :::::::::::::::::::::::::::::: CCDS75 MWFQWSEQRDYIDTTWNCGYLLASSFVFLN 10 20 30 80 90 100 110 120 130 pF1KE0 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE0 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE0 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV 160 170 180 190 200 210 260 pF1KE0 ALGPGGVSMDEKKKEW :::::::::::::::: CCDS75 ALGPGGVSMDEKKKEW 220 >>CCDS65178.1 SURF4 gene_id:6836|Hs108|chr9 (159 aa) initn: 1070 init1: 1052 opt: 1052 Z-score: 1393.7 bits: 264.9 E(32554): 2.6e-71 Smith-Waterman score: 1052; 99.4% identity (100.0% similar) in 157 aa overlap (1-157:1-157) 10 20 30 40 50 60 pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF ::::::::::::::::::::::::::::::::::::. CCDS65 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYLPG 130 140 150 190 200 210 220 230 240 pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF >>CCDS65177.1 SURF4 gene_id:6836|Hs108|chr9 (128 aa) initn: 816 init1: 816 opt: 816 Z-score: 1084.1 bits: 207.2 E(32554): 4.6e-54 Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119) 10 20 30 40 50 60 pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF CCDS65 SRTSWAQL 269 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 22:24:11 2016 done: Thu Nov 3 22:24:11 2016 Total Scan time: 2.210 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]