FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0181, 269 aa
  1>>>pF1KE0181 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0857+/-0.000986; mu= 15.6447+/- 0.058
 mean_var=57.5550+/-11.863, 0's: 0 Z-trim(103.2): 28  B-trim: 0 in 0/46
 Lambda= 0.169057
 statistics sampled from 7288 (7294) to 7288 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS6968.1 SURF4 gene_id:6836|Hs108|chr9           ( 269) 1787 444.2 4.4e-125
CCDS75929.1 SURF4 gene_id:6836|Hs108|chr9          ( 226) 1500 374.2 4.5e-104
CCDS65178.1 SURF4 gene_id:6836|Hs108|chr9          ( 159) 1052 264.9 2.6e-71
CCDS65177.1 SURF4 gene_id:6836|Hs108|chr9          ( 128)  816 207.2 4.6e-54


>>CCDS6968.1 SURF4 gene_id:6836|Hs108|chr9                (269 aa)
 initn: 1787 init1: 1787 opt: 1787  Z-score: 2359.0  bits: 444.2 E(32554): 4.4e-125
Smith-Waterman score: 1787; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
              190       200       210       220       230       240

              250       260         
pF1KE0 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
       :::::::::::::::::::::::::::::
CCDS69 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
              250       260         

>>CCDS75929.1 SURF4 gene_id:6836|Hs108|chr9               (226 aa)
 initn: 1500 init1: 1500 opt: 1500  Z-score: 1981.9  bits: 374.2 E(32554): 4.5e-104
Smith-Waterman score: 1500; 100.0% identity (100.0% similar) in 226 aa overlap (44-269:1-226)

            20        30        40        50        60        70   
pF1KE0 ADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLN
                                     ::::::::::::::::::::::::::::::
CCDS75                               MWFQWSEQRDYIDTTWNCGYLLASSFVFLN
                                             10        20        30

            80        90       100       110       120       130   
pF1KE0 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KE0 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI
              100       110       120       130       140       150

           200       210       220       230       240       250   
pF1KE0 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV
              160       170       180       190       200       210

           260         
pF1KE0 ALGPGGVSMDEKKKEW
       ::::::::::::::::
CCDS75 ALGPGGVSMDEKKKEW
              220      

>>CCDS65178.1 SURF4 gene_id:6836|Hs108|chr9               (159 aa)
 initn: 1070 init1: 1052 opt: 1052  Z-score: 1393.7  bits: 264.9 E(32554): 2.6e-71
Smith-Waterman score: 1052; 99.4% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
       ::::::::::::::::::::::::::::::::::::.                       
CCDS65 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYLPG                     
              130       140       150                              

              190       200       210       220       230       240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF

>>CCDS65177.1 SURF4 gene_id:6836|Hs108|chr9               (128 aa)
 initn: 816 init1: 816 opt: 816  Z-score: 1084.1  bits: 207.2 E(32554): 4.6e-54
Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS65 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
                                                                   
CCDS65 SRTSWAQL                                                    
                                                                   




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:24:11 2016 done: Thu Nov  3 22:24:11 2016
 Total Scan time:  2.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]