Result of FASTA (omim) for
pF1KE0181
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0181, 269 aa
1>>>pF1KE0181 269 - 269 aa - 269 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3647+/-0.000431; mu= 19.8259+/- 0.026
mean_var=59.2721+/-12.378, 0's: 0 Z-trim(108.8): 25 B-trim: 942 in 1/50
Lambda= 0.166590
statistics sampled from 16938 (16953) to 16938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.553), E-opt: 0.2 (0.199), width: 16
Scan time: 6.320
The best scores are: opt bits E(85289)
NP_149351 (OMIM: 185660) surfeit locus protein 4 i ( 269) 1787 438.2 7.8e-123
XP_011517246 (OMIM: 185660) PREDICTED: surfeit loc ( 260) 1685 413.6 1.8e-115
XP_011517245 (OMIM: 185660) PREDICTED: surfeit loc ( 260) 1685 413.6 1.8e-115
NP_001267717 (OMIM: 185660) surfeit locus protein ( 254) 1678 411.9 5.7e-115
NP_001267720 (OMIM: 185660) surfeit locus protein ( 226) 1500 369.1 4e-102
NP_001267719 (OMIM: 185660) surfeit locus protein ( 226) 1500 369.1 4e-102
NP_001267718 (OMIM: 185660) surfeit locus protein ( 159) 1052 261.3 8e-70
NP_001267722 (OMIM: 185660) surfeit locus protein ( 152) 985 245.2 5.4e-65
NP_001267721 (OMIM: 185660) surfeit locus protein ( 128) 816 204.5 8.1e-53
XP_016870551 (OMIM: 185660) PREDICTED: surfeit loc ( 160) 715 180.3 1.9e-45
XP_011517247 (OMIM: 185660) PREDICTED: surfeit loc ( 206) 585 149.2 5.9e-36
>>NP_149351 (OMIM: 185660) surfeit locus protein 4 isofo (269 aa)
initn: 1787 init1: 1787 opt: 1787 Z-score: 2326.3 bits: 438.2 E(85289): 7.8e-123
Smith-Waterman score: 1787; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
190 200 210 220 230 240
250 260
pF1KE0 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
:::::::::::::::::::::::::::::
NP_149 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
250 260
>>XP_011517246 (OMIM: 185660) PREDICTED: surfeit locus p (260 aa)
initn: 1685 init1: 1685 opt: 1685 Z-score: 2194.0 bits: 413.6 E(85289): 1.8e-115
Smith-Waterman score: 1685; 98.8% identity (99.6% similar) in 257 aa overlap (13-269:4-260)
10 20 30 40 50 60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
.: .::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRSLATEFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
180 190 200 210 220 230
250 260
pF1KE0 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
:::::::::::::::::::::::::::::
XP_011 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
240 250 260
>>XP_011517245 (OMIM: 185660) PREDICTED: surfeit locus p (260 aa)
initn: 1685 init1: 1685 opt: 1685 Z-score: 2194.0 bits: 413.6 E(85289): 1.8e-115
Smith-Waterman score: 1685; 98.8% identity (99.6% similar) in 257 aa overlap (13-269:4-260)
10 20 30 40 50 60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
.: .::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRSLATEFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
180 190 200 210 220 230
250 260
pF1KE0 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
:::::::::::::::::::::::::::::
XP_011 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
240 250 260
>>NP_001267717 (OMIM: 185660) surfeit locus protein 4 is (254 aa)
initn: 1678 init1: 1678 opt: 1678 Z-score: 2185.0 bits: 411.9 E(85289): 5.7e-115
Smith-Waterman score: 1678; 100.0% identity (100.0% similar) in 253 aa overlap (17-269:2-254)
10 20 30 40 50 60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
10 20 30 40
70 80 90 100 110 120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
170 180 190 200 210 220
250 260
pF1KE0 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
:::::::::::::::::::::::::::::
NP_001 QTMSVIGGLLLVVALGPGGVSMDEKKKEW
230 240 250
>>NP_001267720 (OMIM: 185660) surfeit locus protein 4 is (226 aa)
initn: 1500 init1: 1500 opt: 1500 Z-score: 1954.5 bits: 369.1 E(85289): 4e-102
Smith-Waterman score: 1500; 100.0% identity (100.0% similar) in 226 aa overlap (44-269:1-226)
20 30 40 50 60 70
pF1KE0 ADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLN
::::::::::::::::::::::::::::::
NP_001 MWFQWSEQRDYIDTTWNCGYLLASSFVFLN
10 20 30
80 90 100 110 120 130
pF1KE0 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE0 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV
160 170 180 190 200 210
260
pF1KE0 ALGPGGVSMDEKKKEW
::::::::::::::::
NP_001 ALGPGGVSMDEKKKEW
220
>>NP_001267719 (OMIM: 185660) surfeit locus protein 4 is (226 aa)
initn: 1500 init1: 1500 opt: 1500 Z-score: 1954.5 bits: 369.1 E(85289): 4e-102
Smith-Waterman score: 1500; 100.0% identity (100.0% similar) in 226 aa overlap (44-269:1-226)
20 30 40 50 60 70
pF1KE0 ADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLN
::::::::::::::::::::::::::::::
NP_001 MWFQWSEQRDYIDTTWNCGYLLASSFVFLN
10 20 30
80 90 100 110 120 130
pF1KE0 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE0 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVV
160 170 180 190 200 210
260
pF1KE0 ALGPGGVSMDEKKKEW
::::::::::::::::
NP_001 ALGPGGVSMDEKKKEW
220
>>NP_001267718 (OMIM: 185660) surfeit locus protein 4 is (159 aa)
initn: 1070 init1: 1052 opt: 1052 Z-score: 1374.5 bits: 261.3 E(85289): 8e-70
Smith-Waterman score: 1052; 99.4% identity (100.0% similar) in 157 aa overlap (1-157:1-157)
10 20 30 40 50 60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
::::::::::::::::::::::::::::::::::::.
NP_001 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYLPG
130 140 150
190 200 210 220 230 240
pF1KE0 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
>>NP_001267722 (OMIM: 185660) surfeit locus protein 4 is (152 aa)
initn: 985 init1: 985 opt: 985 Z-score: 1287.8 bits: 245.2 E(85289): 5.4e-65
Smith-Waterman score: 985; 100.0% identity (100.0% similar) in 152 aa overlap (118-269:1-152)
90 100 110 120 130 140
pF1KE0 NFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAESRSEGKSMFAGVPT
::::::::::::::::::::::::::::::
NP_001 MRNLALGGGLLLLLAESRSEGKSMFAGVPT
10 20 30
150 160 170 180 190 200
pF1KE0 MRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMILVAIGFKTKLAALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMILVAIGFKTKLAALT
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE0 LVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALGPGGVSMDEKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALGPGGVSMDEKKK
100 110 120 130 140 150
pF1KE0 EW
::
NP_001 EW
>>NP_001267721 (OMIM: 185660) surfeit locus protein 4 is (128 aa)
initn: 816 init1: 816 opt: 816 Z-score: 1069.2 bits: 204.5 E(85289): 8.1e-53
Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
NP_001 SRTSWAQL
>>XP_016870551 (OMIM: 185660) PREDICTED: surfeit locus p (160 aa)
initn: 715 init1: 715 opt: 715 Z-score: 936.8 bits: 180.3 E(85289): 1.9e-45
Smith-Waterman score: 715; 99.1% identity (99.1% similar) in 106 aa overlap (14-119:46-151)
10 20 30 40
pF1KE0 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIR
: ::::::::::::::::::::::::::::
XP_016 ASVPHTPRPRTCLAAAWCSPPQPPHPWVSVALQFLRVTKQYLPHVARLCLISTFLEDGIR
20 30 40 50 60 70
50 60 70 80 90 100
pF1KE0 MWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIAL
80 90 100 110 120 130
110 120 130 140 150 160
pF1KE0 QTIAYSILWDLKFLMRNLALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRV
::::::::::::::::
XP_016 QTIAYSILWDLKFLMRLSRTSWAQL
140 150 160
269 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:24:11 2016 done: Thu Nov 3 22:24:12 2016
Total Scan time: 6.320 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]