FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0186, 220 aa 1>>>pF1KE0186 220 - 220 aa - 220 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2934+/-0.000818; mu= 13.6156+/- 0.049 mean_var=62.5819+/-12.459, 0's: 0 Z-trim(106.8): 12 B-trim: 0 in 0/49 Lambda= 0.162125 statistics sampled from 9217 (9221) to 9217 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.283), width: 16 Scan time: 2.030 The best scores are: opt bits E(32554) CCDS4057.1 ATG10 gene_id:83734|Hs108|chr5 ( 220) 1540 368.6 1.8e-102 >>CCDS4057.1 ATG10 gene_id:83734|Hs108|chr5 (220 aa) initn: 1540 init1: 1540 opt: 1540 Z-score: 1953.2 bits: 368.6 E(32554): 1.8e-102 Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ 130 140 150 160 170 180 190 200 210 220 pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP :::::::::::::::::::::::::::::::::::::::: CCDS40 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP 190 200 210 220 220 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 22:11:56 2016 done: Thu Nov 3 22:11:57 2016 Total Scan time: 2.030 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]