Result of FASTA (omim) for
pF1KE0193
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0193, 359 aa
1>>>pF1KE0193 359 - 359 aa - 359 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0170+/-0.000338; mu= 17.5452+/- 0.021
mean_var=58.1644+/-11.940, 0's: 0 Z-trim(115.8): 27 B-trim: 718 in 1/49
Lambda= 0.168169
statistics sampled from 26475 (26501) to 26475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.311), width: 16
Scan time: 8.480
The best scores are: opt bits E(85289)
NP_001135764 (OMIM: 609552,616887) VIP36-like prot ( 359) 2468 606.9 2.3e-173
NP_001309276 (OMIM: 609552,616887) VIP36-like prot ( 221) 1498 371.4 1.1e-102
NP_001309281 (OMIM: 609552,616887) VIP36-like prot ( 221) 1498 371.4 1.1e-102
NP_001309283 (OMIM: 609552,616887) VIP36-like prot ( 214) 1281 318.8 7.3e-87
NP_001309275 (OMIM: 609552,616887) VIP36-like prot ( 214) 1281 318.8 7.3e-87
NP_001309285 (OMIM: 609552,616887) VIP36-like prot ( 203) 1211 301.8 9e-82
NP_001309280 (OMIM: 609552,616887) VIP36-like prot ( 203) 1211 301.8 9e-82
NP_001309284 (OMIM: 609552,616887) VIP36-like prot ( 203) 1211 301.8 9e-82
NP_001309279 (OMIM: 609552,616887) VIP36-like prot ( 210) 1206 300.6 2.2e-81
NP_110432 (OMIM: 609552,616887) VIP36-like protein ( 348) 1206 300.7 3.3e-81
NP_006807 (OMIM: 609551) vesicular integral-membra ( 356) 706 179.4 1.1e-44
NP_005561 (OMIM: 227300,601567) protein ERGIC-53 p ( 510) 319 85.6 2.8e-16
NP_068591 (OMIM: 609548) protein ERGIC-53-like pre ( 526) 286 77.6 7.3e-14
>>NP_001135764 (OMIM: 609552,616887) VIP36-like protein (359 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 3233.5 bits: 606.9 E(85289): 2.3e-173
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KE0 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
310 320 330 340 350
>>NP_001309276 (OMIM: 609552,616887) VIP36-like protein (221 aa)
initn: 1498 init1: 1498 opt: 1498 Z-score: 1964.8 bits: 371.4 E(85289): 1.1e-102
Smith-Waterman score: 1498; 100.0% identity (100.0% similar) in 221 aa overlap (139-359:1-221)
110 120 130 140 150 160
pF1KE0 WELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQ
::::::::::::::::::::::::::::::
NP_001 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQ
10 20 30
170 180 190 200 210 220
pF1KE0 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRY
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE0 VKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVE
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE0 RTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYN
160 170 180 190 200 210
350
pF1KE0 KWQEQSRKRFY
:::::::::::
NP_001 KWQEQSRKRFY
220
>>NP_001309281 (OMIM: 609552,616887) VIP36-like protein (221 aa)
initn: 1498 init1: 1498 opt: 1498 Z-score: 1964.8 bits: 371.4 E(85289): 1.1e-102
Smith-Waterman score: 1498; 100.0% identity (100.0% similar) in 221 aa overlap (139-359:1-221)
110 120 130 140 150 160
pF1KE0 WELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQ
::::::::::::::::::::::::::::::
NP_001 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQ
10 20 30
170 180 190 200 210 220
pF1KE0 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRY
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE0 VKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVE
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE0 RTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYN
160 170 180 190 200 210
350
pF1KE0 KWQEQSRKRFY
:::::::::::
NP_001 KWQEQSRKRFY
220
>>NP_001309283 (OMIM: 609552,616887) VIP36-like protein (214 aa)
initn: 1281 init1: 1281 opt: 1281 Z-score: 1680.5 bits: 318.8 E(85289): 7.3e-87
Smith-Waterman score: 1281; 99.5% identity (100.0% similar) in 191 aa overlap (169-359:24-214)
140 150 160 170 180 190
pF1KE0 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNGSLSYD
.:::::::::::::::::::::::::::::
NP_001 MDKERRICMGMAWQSGTQRIGCSQAQKRRYSPGVQRVFPYISAMVNNGSLSYD
10 20 30 40 50
200 210 220 230 240 250
pF1KE0 HERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPR
60 70 80 90 100 110
260 270 280 290 300 310
pF1KE0 GYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLP
120 130 140 150 160 170
320 330 340 350
pF1KE0 PLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
:::::::::::::::::::::::::::::::::::::::::
NP_001 PLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
180 190 200 210
>>NP_001309275 (OMIM: 609552,616887) VIP36-like protein (214 aa)
initn: 1281 init1: 1281 opt: 1281 Z-score: 1680.5 bits: 318.8 E(85289): 7.3e-87
Smith-Waterman score: 1281; 99.5% identity (100.0% similar) in 191 aa overlap (169-359:24-214)
140 150 160 170 180 190
pF1KE0 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNGSLSYD
.:::::::::::::::::::::::::::::
NP_001 MDKERRICMGMAWQSGTQRIGCSQAQKRRYSPGVQRVFPYISAMVNNGSLSYD
10 20 30 40 50
200 210 220 230 240 250
pF1KE0 HERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPR
60 70 80 90 100 110
260 270 280 290 300 310
pF1KE0 GYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLP
120 130 140 150 160 170
320 330 340 350
pF1KE0 PLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
:::::::::::::::::::::::::::::::::::::::::
NP_001 PLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
180 190 200 210
>>NP_001309285 (OMIM: 609552,616887) VIP36-like protein (203 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1589.0 bits: 301.8 E(85289): 9e-82
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 180 aa overlap (180-359:24-203)
150 160 170 180 190 200
pF1KE0 KFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELG
::::::::::::::::::::::::::::::
NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELG
10 20 30 40 50
210 220 230 240 250 260
pF1KE0 GCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITG
60 70 80 90 100 110
270 280 290 300 310 320
pF1KE0 DLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIV
120 130 140 150 160 170
330 340 350
pF1KE0 FFSLVFSVFAIVIGIILYNKWQEQSRKRFY
::::::::::::::::::::::::::::::
NP_001 FFSLVFSVFAIVIGIILYNKWQEQSRKRFY
180 190 200
>>NP_001309280 (OMIM: 609552,616887) VIP36-like protein (203 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1589.0 bits: 301.8 E(85289): 9e-82
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 180 aa overlap (180-359:24-203)
150 160 170 180 190 200
pF1KE0 KFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELG
::::::::::::::::::::::::::::::
NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELG
10 20 30 40 50
210 220 230 240 250 260
pF1KE0 GCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITG
60 70 80 90 100 110
270 280 290 300 310 320
pF1KE0 DLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIV
120 130 140 150 160 170
330 340 350
pF1KE0 FFSLVFSVFAIVIGIILYNKWQEQSRKRFY
::::::::::::::::::::::::::::::
NP_001 FFSLVFSVFAIVIGIILYNKWQEQSRKRFY
180 190 200
>>NP_001309284 (OMIM: 609552,616887) VIP36-like protein (203 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1589.0 bits: 301.8 E(85289): 9e-82
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 180 aa overlap (180-359:24-203)
150 160 170 180 190 200
pF1KE0 KFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELG
::::::::::::::::::::::::::::::
NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELG
10 20 30 40 50
210 220 230 240 250 260
pF1KE0 GCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTAIVRNLHYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITG
60 70 80 90 100 110
270 280 290 300 310 320
pF1KE0 DLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIV
120 130 140 150 160 170
330 340 350
pF1KE0 FFSLVFSVFAIVIGIILYNKWQEQSRKRFY
::::::::::::::::::::::::::::::
NP_001 FFSLVFSVFAIVIGIILYNKWQEQSRKRFY
180 190 200
>>NP_001309279 (OMIM: 609552,616887) VIP36-like protein (210 aa)
initn: 1206 init1: 1206 opt: 1206 Z-score: 1582.2 bits: 300.6 E(85289): 2.2e-81
Smith-Waterman score: 1391; 95.0% identity (95.0% similar) in 221 aa overlap (139-359:1-210)
110 120 130 140 150 160
pF1KE0 WELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQ
::::::::::::::::::::::::::::::
NP_001 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQ
10 20 30
170 180 190 200 210 220
pF1KE0 EAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRY
: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 E-----------RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRY
40 50 60 70
230 240 250 260 270 280
pF1KE0 VKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKRHLTIMMDIDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVE
80 90 100 110 120 130
290 300 310 320 330 340
pF1KE0 RTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYN
140 150 160 170 180 190
350
pF1KE0 KWQEQSRKRFY
:::::::::::
NP_001 KWQEQSRKRFY
200 210
>>NP_110432 (OMIM: 609552,616887) VIP36-like protein iso (348 aa)
initn: 1210 init1: 1206 opt: 1206 Z-score: 1578.9 bits: 300.7 E(85289): 3.3e-81
Smith-Waterman score: 2361; 96.9% identity (96.9% similar) in 359 aa overlap (1-359:1-348)
10 20 30 40 50 60
pF1KE0 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGSGQGPQQVGAGQTFEYLKREHSLSKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 YQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQVHFKIHGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKRRYSPGVQ
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 GKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQE-----------
130 140 150 160
190 200 210 220 230 240
pF1KE0 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 RVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMDID
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 GKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDV
230 240 250 260 270 280
310 320 330 340 350
pF1KE0 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 FLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
290 300 310 320 330 340
359 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:44:18 2016 done: Thu Nov 3 21:44:19 2016
Total Scan time: 8.480 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]