FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0200, 454 aa
  1>>>pF1KE0200 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4196+/-0.000779; mu= 5.2696+/- 0.048
 mean_var=183.7783+/-36.515, 0's: 0 Z-trim(115.1): 20  B-trim: 37 in 1/53
 Lambda= 0.094608
 statistics sampled from 15603 (15618) to 15603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.48), width:  16
 Scan time:  3.930

The best scores are:                                      opt bits E(32554)
CCDS6359.2 MYC gene_id:4609|Hs108|chr8             ( 454) 3030 425.4  6e-119
CCDS1687.1 MYCN gene_id:4613|Hs108|chr2            ( 464)  468 75.7 1.1e-13


>>CCDS6359.2 MYC gene_id:4609|Hs108|chr8                  (454 aa)
 initn: 3030 init1: 3030 opt: 3030  Z-score: 2248.9  bits: 425.4 E(32554): 6e-119
Smith-Waterman score: 3030; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KE0 MDFFRVVENQQPPATMPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MDFFRVVENQQPPATMPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKLVSEKLASYQAARKDSGSPNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKLVSEKLASYQAARKDSGSPNPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RGHSVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RGHSVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 STESSPQGSPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGKRSESGSPSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 STESSPQGSPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGKRSESGSPSAG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GHSKPPHSPLVLKRCHVSTHQHNYAAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GHSKPPHSPLVLKRCHVSTHQHNYAAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 RSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILS
              370       380       390       400       410       420

              430       440       450    
pF1KE0 VQAEEQKLISEEDLLRKRREQLKHKLEQLRNSCA
       ::::::::::::::::::::::::::::::::::
CCDS63 VQAEEQKLISEEDLLRKRREQLKHKLEQLRNSCA
              430       440       450    

>>CCDS1687.1 MYCN gene_id:4613|Hs108|chr2                 (464 aa)
 initn: 791 init1: 360 opt: 468  Z-score: 358.9  bits: 75.7 E(32554): 1.1e-13
Smith-Waterman score: 876; 40.4% identity (61.7% similar) in 488 aa overlap (14-453:7-464)

               10        20        30        40        50        60
pF1KE0 MDFFRVVENQQPPATMPLNVSFTNRNYDLDYDSVQPYFYCDEEENFYQQQQQSELQPPAP
                    .:::  .    .: ::..::.:: :: ::.. ::    .:   ::. 
CCDS16        MPSCSTSTMPGMIC---KNPDLEFDSLQPCFYPDEDD-FYFGGPDST--PPG-
                      10           20        30         40         

               70        80           90       100       110       
pF1KE0 SEDIWKKFELLPTPPLSPSRRSGLCS---PSYVAVTPFSLRGDNDGGGGSFSTADQLEMV
        :::::::::::::::::::  .  :   ::.  :: . :  .:.  :   : :..  . 
CCDS16 -EDIWKKFELLPTPPLSPSRGFAEHSSEPPSW--VTEMLL--ENELWG---SPAEEDAFG
          50        60        70          80             90        

       120       130       140       150          160              
pF1KE0 TELLGGDMVNQSFICDPDDETFIKNIIIQDCMWSGFSAAAKL---VSEKL--------AS
          :::   :      :        .:.::::::::::  ::   :::::        :.
CCDS16 LGGLGGLTPN------P--------VILQDCMWSGFSAREKLERAVSEKLQHGRGPPTAG
      100                     110       120       130       140    

        170       180            190       200       210        220
pF1KE0 YQAARKDSGSPNPA-RGHSVCS----TSSLYLQDLSAAASECIDPSVVFPYPLNDSS-SP
         :    .:. .:: :::.  .    ...    .:.  :.::.::.::::.:.:    .:
CCDS16 STAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELAHPAAECVDPAVVFPFPVNKREPAP
          150       160       170       180       190       200    

              230         240        250                   260     
pF1KE0 KSCASQDSSAFSPS--SDSLLSSTESSPQ-GSPEP------------LVLHEETPPTTSS
          :  .. : .:.  : . ...  ..:  . :.:            :    :   . :.
CCDS16 VPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPGGRQTSGGDHKALSTSGEDTLSDSD
          210       220       230       240       250       260    

         270        280       290               300       310      
pF1KE0 DSEEEQEDEEE-IDVVSVEKRQAPGKRSESGS------P--SAGGHSKPPHSPLVLKRCH
       : ..:.::::: ::::.::::.. .. .   .      :  .: : ..   : :.:::: 
CCDS16 DEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTITVRPKNAALGPGRAQSSELILKRCL
          270       280       290       300       310       320    

        320        330        340        350        360       370  
pF1KE0 VSTHQHNYAAP-PSTR-KDYPAAKRVKLD-SVRVLRQISNNR-KCTSPRSSDTEENVKRR
          .::::::: : .. .: :  :..: . : : :...   . :  :::.::.:.. .::
CCDS16 PIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLKSVIPPKAKSLSPRNSDSEDSERRR
          330       340       350       360       370       380    

            380       390       400       410       420       430  
pF1KE0 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE
       .::.:::::::.:. ::..:::..::: .:::: ::::::::: :. :.::::..:. :.
CCDS16 NHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEK
          390       400       410       420       430       440    

            440       450    
pF1KE0 DLLRKRREQLKHKLEQLRNSCA
       . :. :..:: .:.:. : .: 
CCDS16 EKLQARQQQLLKKIEHAR-TC 
          450       460      




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:57:13 2016 done: Sat Nov  5 01:57:14 2016
 Total Scan time:  3.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]