FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0203, 301 aa
  1>>>pF1KE0203 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2535+/-0.000731; mu= 8.7437+/- 0.045
 mean_var=130.3088+/-25.326, 0's: 0 Z-trim(113.8): 1  B-trim: 0 in 0/54
 Lambda= 0.112354
 statistics sampled from 14373 (14374) to 14373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.442), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS10215.1 TIPIN gene_id:54962|Hs108|chr15        ( 301) 1983 331.8 3.9e-91


>>CCDS10215.1 TIPIN gene_id:54962|Hs108|chr15             (301 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 1749.6  bits: 331.8 E(32554): 3.9e-91
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS10 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
CCDS10 R
        




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:26:07 2016 done: Thu Nov  3 21:26:08 2016
 Total Scan time:  2.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]