Result of FASTA (omim) for pF1KE0203
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0203, 301 aa
  1>>>pF1KE0203 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2731+/-0.000299; mu= 9.0849+/- 0.019
 mean_var=138.9956+/-27.862, 0's: 0 Z-trim(121.4): 8  B-trim: 0 in 0/54
 Lambda= 0.108786
 statistics sampled from 38065 (38073) to 38065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.446), width:  16
 Scan time:  5.950

The best scores are:                                      opt bits E(85289)
NP_060328 (OMIM: 610716) TIMELESS-interacting prot ( 301) 1996 323.8 2.6e-88
XP_006720657 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_016877879 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_005254578 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_011520045 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_005254579 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
NP_001276915 (OMIM: 610716) TIMELESS-interacting p ( 200) 1291 213.0 3.9e-55
XP_016877880 (OMIM: 610716) PREDICTED: TIMELESS-in ( 200) 1291 213.0 3.9e-55


>>NP_060328 (OMIM: 610716) TIMELESS-interacting protein   (301 aa)
 initn: 1996 init1: 1996 opt: 1996  Z-score: 1706.4  bits: 323.8 E(85289): 2.6e-88
Smith-Waterman score: 1996; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
NP_060 R
        

>>XP_006720657 (OMIM: 610716) PREDICTED: TIMELESS-intera  (301 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 1695.4  bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_006 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
XP_006 R
        

>>XP_016877879 (OMIM: 610716) PREDICTED: TIMELESS-intera  (301 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 1695.4  bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_016 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
XP_016 R
        

>>XP_005254578 (OMIM: 610716) PREDICTED: TIMELESS-intera  (301 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 1695.4  bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_005 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
XP_005 R
        

>>XP_011520045 (OMIM: 610716) PREDICTED: TIMELESS-intera  (301 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 1695.4  bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_011 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
XP_011 R
        

>>XP_005254579 (OMIM: 610716) PREDICTED: TIMELESS-intera  (301 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 1695.4  bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_005 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
              250       260       270       280       290       300

        
pF1KE0 R
       :
XP_005 R
        

>>NP_001276915 (OMIM: 610716) TIMELESS-interacting prote  (200 aa)
 initn: 1291 init1: 1291 opt: 1291  Z-score: 1110.9  bits: 213.0 E(85289): 3.9e-55
Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 200 aa overlap (102-301:1-200)

              80        90       100       110       120       130 
pF1KE0 LISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
                                     ::::::::::::::::::::::::::::::
NP_001                               MLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
                                             10        20        30

             140       150       160       170       180       190 
pF1KE0 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
               40        50        60        70        80        90

             200       210       220       230       240       250 
pF1KE0 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
              100       110       120       130       140       150

             260       270       280       290       300 
pF1KE0 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
              160       170       180       190       200

>>XP_016877880 (OMIM: 610716) PREDICTED: TIMELESS-intera  (200 aa)
 initn: 1291 init1: 1291 opt: 1291  Z-score: 1110.9  bits: 213.0 E(85289): 3.9e-55
Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 200 aa overlap (102-301:1-200)

              80        90       100       110       120       130 
pF1KE0 LISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
                                     ::::::::::::::::::::::::::::::
XP_016                               MLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
                                             10        20        30

             140       150       160       170       180       190 
pF1KE0 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
               40        50        60        70        80        90

             200       210       220       230       240       250 
pF1KE0 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
              100       110       120       130       140       150

             260       270       280       290       300 
pF1KE0 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
              160       170       180       190       200




301 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:26:08 2016 done: Thu Nov  3 21:26:09 2016
 Total Scan time:  5.950 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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