FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0205, 214 aa
  1>>>pF1KE0205 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2120+/-0.000755; mu= 13.7666+/- 0.045
 mean_var=57.6292+/-11.535, 0's: 0 Z-trim(107.3): 7  B-trim: 0 in 0/52
 Lambda= 0.168948
 statistics sampled from 9519 (9522) to 9519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.292), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS32071.1 RPL10L gene_id:140801|Hs108|chr14      ( 214) 1501 373.8 4.5e-104
CCDS14746.1 RPL10 gene_id:6134|Hs108|chrX          ( 214) 1438 358.4 1.9e-99
CCDS76059.1 RPL10 gene_id:6134|Hs108|chrX          ( 178)  998 251.1 3.1e-67


>>CCDS32071.1 RPL10L gene_id:140801|Hs108|chr14           (214 aa)
 initn: 1501 init1: 1501 opt: 1501  Z-score: 1981.8  bits: 373.8 E(32554): 4.5e-104
Smith-Waterman score: 1501; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::::::::::::::::::::::::::::::
CCDS32 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
              190       200       210    

>>CCDS14746.1 RPL10 gene_id:6134|Hs108|chrX               (214 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1898.9  bits: 358.4 E(32554): 1.9e-99
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS14 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
CCDS14 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS14 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::.: ::::::::::.::.:::::::.:::
CCDS14 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>CCDS76059.1 RPL10 gene_id:6134|Hs108|chrX               (178 aa)
 initn: 1199 init1: 997 opt: 998  Z-score: 1320.5  bits: 251.1 E(32554): 3.1e-67
Smith-Waterman score: 1131; 79.4% identity (82.7% similar) in 214 aa overlap (1-214:1-178)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
       :::::::::::::::::::::::::::                                 
CCDS76 MGRRPARCYRYCKNKPYPKSRFCRGVP---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
          ::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
CCDS76 ---ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
           30        40        50        60        70        80    

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS76 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
           90       100       110       120       130       140    

              190       200       210    
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
       ::::::.: ::::::::::.::.:::::::.:::
CCDS76 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
          150       160       170        




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:22:24 2016 done: Thu Nov  3 21:22:24 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]