FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0210, 270 aa
  1>>>pF1KE0210 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3954+/-0.000836; mu= 14.0929+/- 0.050
 mean_var=60.3281+/-12.317, 0's: 0 Z-trim(105.6): 12  B-trim: 0 in 0/51
 Lambda= 0.165126
 statistics sampled from 8500 (8505) to 8500 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.261), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS8525.1 TIGAR gene_id:57103|Hs108|chr12         ( 270) 1770 430.0 8.4e-121


>>CCDS8525.1 TIGAR gene_id:57103|Hs108|chr12              (270 aa)
 initn: 1770 init1: 1770 opt: 1770  Z-score: 2282.3  bits: 430.0 E(32554): 8.4e-121
Smith-Waterman score: 1770; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE0 MARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKFTHAFSSDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKFTHAFSSDLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RTKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 RTKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFTPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKNHSSKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKNHSSKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGMSLFII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 NSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGMSLFII
              190       200       210       220       230       240

              250       260       270
pF1KE0 NFEEGREVKPTVQCICMNLQDHLNGLTETR
       ::::::::::::::::::::::::::::::
CCDS85 NFEEGREVKPTVQCICMNLQDHLNGLTETR
              250       260       270




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:09:38 2016 done: Thu Nov  3 21:09:39 2016
 Total Scan time:  1.960 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]